FC875676

Overview
NameFC875676
Unique NameFC875676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10292 contig Ccv1_Contig10292:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.279e-30
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.279e-30
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.279e-30
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.279e-30
Identity = 64/162 (39.51%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFRKIAAAL 611
            +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQERFR++  SY R             R +FL+   WI++VR   GS+++ +L+GNK+DL + R+V + E ++ +   +++  IETSAK   N++  F ++A  L
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 65/167 (38.92%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 626
            ++KLV LG+ +VGK+S++ RF+   F +  ++TIG  FL++T+ L D TV+ ++WDTAGQER+ +L P Y R               SF    KW+ E++ +   +++I L GNK DL  KR+V   E +  + E  ++F+ETSAK   N+  LF +IA  LP   T
Sbjct:    9 QFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPT 175          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAKA  NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAKA  NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAKA  NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 63/161 (39.13%), Postives = 99/161 (61.49%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQERFR++  SY R             ++SF N  +W++E+      +V  +LVGNK DL E R VS E G+A + E+ + F+ETSAK   N++  F  +A  +
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEI 169          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 63/158 (39.87%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 602
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+E SAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLA 166          
The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_PONAB7.279e-3040.51Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE7.279e-3040.51Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN7.279e-3040.51Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB43_MOUSE7.279e-3039.51Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB5A_DICDI1.242e-2938.92Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB10_PONAB1.242e-2942.41Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.242e-2942.41Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.242e-2942.41Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RIC1_ORYSJ1.621e-2939.13Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8B_BOVIN1.621e-2939.87Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401F01EF CTVClemen1 Citrus clementina cDNA clone C31401F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bp
AACACTGAACAGAGTCTTGGCTTTACTAAAATTGCTTCAGCTTATTAAAC
AAATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAA
AATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAG
ATCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAA
TTCGATAACACCTATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAAC
TATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTG
GACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCT
GTTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACAC
TTCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCA
TTGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCC
ATAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGA
AACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTG
CTGCAGCATTGCCAGGGATGGAAACACTTTCTTCAAACAAGCAGAAGAAT
GGTTGACGTGAATCTGAGGTCTACACTGGCATGCATCACAGTCCAGTCTC
AGTCAGTGGATGCTCTGTGATGCATCCTGGACGCTGGTGCTATGTCCTCC
AGCTATTAGTCTTCGACTT
back to top