FC875676

Overview
NameFC875676
Unique NameFC875676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10292 contig Ccv1_Contig10292:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28
Identity = 58/157 (36.94%), Postives = 93/157 (59.24%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 599
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LVGNK DL ++R V  E+G   + +L   F E SAK   N+K +F ++
Sbjct:   23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28
Identity = 60/161 (37.27%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK+DL  K+ V     +  + +L + F+ETSAK   N++  F  +AA +
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+WDTAGQERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK+DL  K+ V  +  +A + E+ + F+ETSAK   N++  F  +AA +
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP---GMETLSSNKQKN 650
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T  LE +TV+LQ+WDTAGQERFR++  SY R             + SF N  +W+ E+       V  +LVGNK+D+V+K+ V     +  +  LN+ F+ETSAK   N++  F  ++  +    G  T +S+  K+
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKS 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 62/205 (30.24%), Postives = 118/205 (57.56%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM----ETLSSNKQKNG*RESEVYTGMHHSPVSVSGCSVMHPG 731
            +K+V +GD +VGK+ I+ RF  ++F    +ATIG++F ++T+ ++ ++V+ Q+WDTAGQER+R++  +Y R             RQ+F +  +W++E+R     +++I+L+GNKTDL ++R V  E+ +  +++  + F+ETSA    N++  F  +   +  +       + + Q NG            +P S++G  ++ PG
Sbjct:   16 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNG------------NPASLTGKKILVPG 208          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 611
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +R V  EEGEA +RE  ++F+ETSAK   N+        K ++RKI   L
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGL 175          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 611
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +R V  EEGEA +RE  ++F+ETSAK   N+        K ++RKI   L
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 175          
The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3D_HUMAN3.994e-2836.94Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB1A_LYMST3.994e-2837.27Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTV1_VOLCA5.216e-2837.27GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPT1_SCHPO5.216e-2836.72GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RB11D_TOBAC5.216e-2830.24Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB30_MOUSE5.216e-2840.37Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN5.216e-2840.37Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN5.216e-2840.37Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB2B_MOUSE5.216e-2835.50Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN5.216e-2835.50Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC31401F01EF CTVClemen1 Citrus clementina cDNA clone C31401F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bp
AACACTGAACAGAGTCTTGGCTTTACTAAAATTGCTTCAGCTTATTAAAC
AAATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAA
AATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAG
ATCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAA
TTCGATAACACCTATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAAC
TATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTG
GACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCT
GTTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACAC
TTCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCA
TTGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCC
ATAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGA
AACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTG
CTGCAGCATTGCCAGGGATGGAAACACTTTCTTCAAACAAGCAGAAGAAT
GGTTGACGTGAATCTGAGGTCTACACTGGCATGCATCACAGTCCAGTCTC
AGTCAGTGGATGCTCTGTGATGCATCCTGGACGCTGGTGCTATGTCCTCC
AGCTATTAGTCTTCGACTT
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