FC875676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28 Identity = 58/157 (36.94%), Postives = 93/157 (59.24%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 599 +KL+ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++LQ+WDTAGQER+R++ +Y R ++SF W +++T + ++LVGNK DL ++R V E+G + +L F E SAK N+K +F ++ Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28 Identity = 60/161 (37.27%), Postives = 97/161 (60.25%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY R ++SF N +W+ E+ +V +LVGNK+DL K+ V + + +L + F+ETSAK N++ F +AA + Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ + ++LQ+WDTAGQERFR++ SY R ++SF N +W+ E+ +V +LVGNK+DL K+ V + +A + E+ + F+ETSAK N++ F +AA + Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP---GMETLSSNKQKN 650 +KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T LE +TV+LQ+WDTAGQERFR++ SY R + SF N +W+ E+ V +LVGNK+D+V+K+ V + + LN+ F+ETSAK N++ F ++ + G T +S+ K+ Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKS 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 62/205 (30.24%), Postives = 118/205 (57.56%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM----ETLSSNKQKNG*RESEVYTGMHHSPVSVSGCSVMHPG 731 +K+V +GD +VGK+ I+ RF ++F +ATIG++F ++T+ ++ ++V+ Q+WDTAGQER+R++ +Y R RQ+F + +W++E+R +++I+L+GNKTDL ++R V E+ + +++ + F+ETSA N++ F + + + + + Q NG +P S++G ++ PG Sbjct: 16 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNG------------NPASLTGKKILVPG 208
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +K+V +G+ VGKT ++ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQERFRS+ SY R +SF +W+ E+ + VI VLVGNK DL E+R+VS + E S ++ ++ETSAK N++ LF +A L Sbjct: 10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +K+V +G+ VGKT ++ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQERFRS+ SY R +SF +W+ E+ + VI VLVGNK DL E+R+VS + E S ++ ++ETSAK N++ LF +A L Sbjct: 10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +K+V +G+ VGKT ++ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQERFRS+ SY R +SF +W+ E+ + VI VLVGNK DL E+R+VS + E S ++ ++ETSAK N++ LF +A L Sbjct: 10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 611 +K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R R++F + + W+++ R S+++I+L+GNK+DL +R V EEGEA +RE ++F+ETSAK N+ K ++RKI L Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGL 175
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28 Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 611 +K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R R++F + + W+++ R S+++I+L+GNK+DL +R V EEGEA +RE ++F+ETSAK N+ K ++RKI L Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 175 The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bpback to top |