FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875678_ssr457 microsatellite FC875678_ssr457:457..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_CANAL (Palmitoyltransferase PFA4 OS=Candida albicans GN=PFA4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  359 LFHILLVMLVW-SYVMVVFWDPGSVPENWRXXXXXXXXXX-------GVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            L +   V ++W SY++ ++ +PG VP+N++                 G+ LE+    ++L    P +      + +C +C N KPPR HHC +CQ+CVL+MDHHC W +NCVG  N   F
Sbjct:   41 LIYEFYVTMIWISYLLAIYTNPGRVPKNYKPSLASSTRIEQTEDDSDGLGLES-REDETLIREEPISGDRCEWIRYCKKCNNYKPPRSHHCKICQQCVLQMDHHCPWTLNCVGNNNLPHF 159          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH15_MOUSE (Palmitoyltransferase ZDHHC15 OS=Mus musculus GN=Zdhhc15 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 44/117 (37.61%), Postives = 55/117 (47.01%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLD---NVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +IL+H + V   W+Y   +F  P    + +                       +D    +    R  S +V FCDRC   KP RCHHCSVC  CVLKMDHHC WV NC+G  NY  F
Sbjct:   58 LILYHAIFVFFAWTYWKSIFTLPQQPNQKFHLSYTDKERYKNEERPEVQKQMLVDMAKKLPVYTRTGSGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH15_HUMAN (Palmitoyltransferase ZDHHC15 OS=Homo sapiens GN=ZDHHC15 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 44/117 (37.61%), Postives = 55/117 (47.01%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLD---NVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +IL+H + V   W+Y   +F  P    + +                       +D    +    R  S +V FCDRC   KP RCHHCSVC  CVLKMDHHC WV NC+G  NY  F
Sbjct:   58 LILYHAIFVFFTWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH15_RAT (Palmitoyltransferase ZDHHC15 OS=Rattus norvegicus GN=Zdhhc15 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 43/117 (36.75%), Postives = 55/117 (47.01%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLD---NVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +IL+H + V   W+Y   +F  P    + +                       +D    +    R  + +V FCDRC   KP RCHHCSVC  CVLKMDHHC WV NC+G  NY  F
Sbjct:   58 LILYHAIFVFFAWTYWKSIFTLPQQPNQKFHLSYTDKERYKNEERPEVQKQMLVDMAKKLPVYTRTGNGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH15_XENLA (Palmitoyltransferase ZDHHC15 OS=Xenopus laevis GN=zdhhc15 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 40/117 (34.19%), Postives = 56/117 (47.86%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTS---SQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +++FH + ++ +W+Y   +F  P    + +                       ++    +    R  S +  FCD CQ  KP RCHHCSVC  CVLKMDHHC WV NC+G  NY  F
Sbjct:   58 LLIFHTVFLLFIWTYWKAIFTPPKQPTKKFLLPYAEKERYDNEERPEAQKQIVAEFARKLPVYTRTGSGATRFCDTCQMVKPDRCHHCSVCGMCVLKMDHHCPWVNNCIGYSNYKFF 174          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA3_GIBZE (Palmitoyltransferase PFA3 OS=Gibberella zeae GN=PFA3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 46/121 (38.02%), Postives = 58/121 (47.93%), Query Frame = 2
Query:  332 SFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            S+ G    I+   L VML W Y   VF  PGS   +            G  L    ++    +    + G  R   FC +CQ  KP R HHCS C+RCVLKMDHHC W+  C+G RN+  F
Sbjct:   49 SWIGTGSSIVGVALYVMLNWCYTTAVFTPPGSTTNDM-----------GYGLLPTQNTPQATSFTVKSNGEFR---FCKKCQARKPDRAHHCSTCRRCVLKMDHHCPWLATCIGLRNHKAF 155          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ERFB_CANGA (Palmitoyltransferase ERF2 OS=Candida glabrata GN=ERF2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 2
Query:  329 HSFFGF-SIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNV------GPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            H+ +G+ ++++LF+      + S+      DPG +P N             +++   T  +  +NV      G  A   S ++ +C  C+  +PPR  HCSVC+ CVL  DHHC+WV NCVG RNY  F
Sbjct:   88 HTRYGYKALVVLFYYAWAWSLLSFTKTATSDPGVLPRN-------------IHMHKDTPQEYFNNVTLPYGAGGSAGNASVTLKYCHTCKIWRPPRASHCSVCECCVLTHDHHCIWVNNCVGQRNYRYF 203          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH20_ARATH (Probable S-acyltransferase At5g04270 OS=Arabidopsis thaliana GN=At5g04270 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  323 GVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            G+ S  G    +LF +L  + ++S  + V  DPG VP ++               +   S  S  NV    +        CD+C   KP R HHC VC+RCVLKMDHHC+W+ NCVG  NY  FF
Sbjct:   18 GLQSSAGKLNALLFSLLASLCLFSLSICVLVDPGRVPASYAP-------------DVEDSGWSNSNVTETRK--------CDKCFAYKPLRTHHCRVCRRCVLKMDHHCLWINNCVGYANYKAFF 121          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA3_EMENI (Palmitoyltransferase pfa3 OS=Emericella nidulans GN=pfa3 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 47/118 (39.83%), Postives = 58/118 (49.15%), Query Frame = 2
Query:  341 GFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            G    IL  +L + L  SY   VF DPGS P   R           +      +S ++++ G           FC +CQ  KP R HHCS C+RCVLKMDHHC W+  CVG RNY  F
Sbjct:   69 GLPSSILGVVLYLALNISYTTAVFTDPGS-PLGARSGGGHPYSALPITELPEYTSYTVNSTGGSR--------FCKKCQCPKPDRAHHCSTCKRCVLKMDHHCPWLATCVGLRNYKAF 177          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA3_NEUCR (Palmitoyltransferase PFA3 OS=Neurospora crassa GN=pfa-3 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 2
Query:  338 FGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +GF  ++L+    ++  W Y   VF  PGS    +           G +     +  +  +    + G  R   FC +CQ  KP R HHCS C+RCVLKMDHHC W+  CVG RN+  F
Sbjct:   53 YGFIAVVLY----LLANWCYTYAVFTSPGSTTNEY-----------GYSTLPTQAPPTATSFTVKSNGEFR---FCKKCQARKPDRAHHCSTCRRCVLKMDHHCPWLATCVGLRNHKAF 153          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PFA4_CANAL2.076e-1735.00Palmitoyltransferase PFA4 OS=Candida albicans GN=P... [more]
ZDH15_MOUSE3.540e-1737.61Palmitoyltransferase ZDHHC15 OS=Mus musculus GN=Zd... [more]
ZDH15_HUMAN3.540e-1737.61Palmitoyltransferase ZDHHC15 OS=Homo sapiens GN=ZD... [more]
ZDH15_RAT7.887e-1736.75Palmitoyltransferase ZDHHC15 OS=Rattus norvegicus ... [more]
ZDH15_XENLA1.345e-1634.19Palmitoyltransferase ZDHHC15 OS=Xenopus laevis GN=... [more]
PFA3_GIBZE1.345e-1638.02Palmitoyltransferase PFA3 OS=Gibberella zeae GN=PF... [more]
ERFB_CANGA3.914e-1633.33Palmitoyltransferase ERF2 OS=Candida glabrata GN=E... [more]
ZDH20_ARATH5.112e-1637.60Probable S-acyltransferase At5g04270 OS=Arabidopsi... [more]
PFA3_EMENI5.112e-1639.83Palmitoyltransferase pfa3 OS=Emericella nidulans G... [more]
PFA3_NEUCR1.139e-1535.29Palmitoyltransferase PFA3 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
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