FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875678_ssr457 microsatellite FC875678_ssr457:457..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC4_DICDI (Putative ZDHHC-type palmitoyltransferase 4 OS=Dictyostelium discoideum GN=DDB_G0274251 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +C +C   KPPRCHHCSVC +CVLKMDHHC W+  CVG  NY  FF
Sbjct:  128 YCKKCSKAKPPRCHHCSVCDKCVLKMDHHCPWIGGCVGFYNYRYFF 173          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ERFB_EMENI (Palmitoyltransferase erf2 OS=Emericella nidulans GN=erf2 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  335 FFGFS-----------IIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGP-DARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            FFGFS           I +LF  +  +   S++     DPG +P N             + +   T+   +  +   D       V +C  C   +PPRC+HC VC  C+  +DHHCVW+ NCVG RNY  FF
Sbjct:  314 FFGFSGPWLWHNISPAIPVLFAYVFYLCFSSFIHASVVDPGVIPRNLHQMPPVDPSQDPLAIGPPTNDWVMVKLATSDVAAMDVPVKYCKTCSIWRPPRCYHCRVCDNCIETLDHHCVWLNNCVGRRNYRYFF 446          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_USTMA (Palmitoyltransferase PFA4 OS=Ustilago maydis GN=PFA4 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  347 SIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARG-PSRSVG-------FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++++ F++ L+ + ++Y + V  D GSVP  W+             LE   S   L+++   A   PS  +        +C  C   KPPR HHC  CQRCVL+MDHHC W+ NCVG  N++ F
Sbjct:  111 AVLVPFNLGLLAIYYNYWLCVTTDAGSVPAGWQPEWSA--------LEPVASLAELEHLHLVAEEEPSLELKQAIYRPRYCKTCSAFKPPRSHHCKTCQRCVLRMDHHCPWLANCVGHFNHAHF 226          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: YB3F_SCHPO (Uncharacterized protein C2F12.15c OS=Schizosaccharomyces pombe GN=SPBC2F12.15c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 47/134 (35.07%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  302 GPQLLRGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQ--SLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            G Q L  G++      + I+   L +M+V  YV+     PGS  E               + +  ++ Q  +L N      G SR   FC++CQ  K  R HHCS C +C+L+MDHHC+W  NCVG RN+  FF
Sbjct:   33 GVQWLAWGIYKINKNRVGIIILFLYIMIVTCYVLTNLTPPGSPSET--------------SFDPNSTRQYMTLQN------GKSR---FCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFF 143          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH16_BOVIN (Probable palmitoyltransferase ZDHHC16 OS=Bos taurus GN=ZDHHC16 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  527 PDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            P  R    +V  C +C N KP R HHCS+C RCVLKMDHHC W+ NCVG  N+  FF
Sbjct:  145 PQGRNDMTTVSICKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFF 201          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ERFB_ASPFU (Palmitoyltransferase erf2 OS=Aspergillus fumigatus GN=erf2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 40/118 (33.90%), Postives = 56/118 (47.46%), Query Frame = 2
Query:  347 SIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGP-DARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            ++ ILF  L  +   S++     DPG +P N             + +   T+   +  +   D       V +C  C   +PPRC+HC VC  CV  +DHHCVW+ NCVG RNY  FF
Sbjct:  334 AVPILFAYLFYICFSSFIHASVVDPGIIPRNLHPMPPPEPSGDPLLIGPPTNDWVMVKLATSDVAAMDVPVKYCKTCNIWRPPRCYHCRVCDNCVETLDHHCVWLNNCVGRRNYRYFF 451          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: YO44_CAEEL (Uncharacterized protein ZK757.4 OS=Caenorhabditis elegans GN=ZK757.4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPD------ARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            + +F+ LL++   SY+  V+      P+ +            V  +       L ++  +       RG    + FCD+C   KP R HHCS+C++CVLK DHHC WV NCV   NY  F
Sbjct:   58 LFIFYALLILFYTSYLRTVYTKAWKPPQKYCIEGASKATYESVKDDERQLQLFLSDIARERDLTLLVRGFDHGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYF 177          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA3_ASPFU (Palmitoyltransferase pfa3 OS=Aspergillus fumigatus GN=pfa3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/120 (35.83%), Postives = 54/120 (45.00%), Query Frame = 2
Query:  335 FFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            + G    IL  +L + L  SY + VF DPGS                G +  +      L          +    +C +CQ  KP R HHCS C+RCVLKMDHHC W+  CVG  NY  F
Sbjct:   66 WIGLPTSILGVLLYICLNASYTVAVFTDPGS----------PLTTGAGRHQYSALPVSELPEYTAYTVSSTGGSRYCKKCQCPKPDRAHHCSTCKRCVLKMDHHCPWLATCVGLYNYKAF 175          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH19_ARATH (Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  362 FHILLVMLVWS-YVMVVFW-----DPGSVPENWRXXXXXXXXXXGVNLEAGT--SSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            + I++V ++++ YV+++ +     DPG VP N             V+ +     S Q          G S  V +CD C   +PPRC HCS+C  CV + DHHC WV  C+G RNY  FF
Sbjct:   63 YAIMVVAILFTIYVLILLFFTSARDPGIVPRNSHPPEEDLRYETTVSADGRQTPSVQIPRTKEVIVNGVSVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFF 182          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC9_ARATH (Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  338 FGFSIIILFHILLVMLVWSYVMVVFW---DPGSVPENWRXXXXXXXXXXGVNLEAG---TSSQSLDNVGP-DARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +G SI+    + +V  ++  ++++     DPG +P N              N++AG   T    L  +      G +  V +CD C   +PPRC HCS+C  CV + DHHC WV  C+G RNY  FF
Sbjct:   75 WGVSIVA---VAVVFTIYDLILLLLTSGRDPGIIPRNAHPPEPETLDG---NMDAGAGQTPQLRLPRIKEVQLNGITFKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGMRNYRFFF 195          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ZDHC4_DICDI1.487e-1565.22Putative ZDHHC-type palmitoyltransferase 4 OS=Dict... [more]
ERFB_EMENI2.537e-1532.33Palmitoyltransferase erf2 OS=Emericella nidulans G... [more]
PFA4_USTMA3.314e-1535.48Palmitoyltransferase PFA4 OS=Ustilago maydis GN=PF... [more]
YB3F_SCHPO4.328e-1535.07Uncharacterized protein C2F12.15c OS=Schizosacchar... [more]
ZDH16_BOVIN5.652e-1556.14Probable palmitoyltransferase ZDHHC16 OS=Bos tauru... [more]
ERFB_ASPFU5.652e-1533.90Palmitoyltransferase erf2 OS=Aspergillus fumigatus... [more]
YO44_CAEEL1.645e-1432.50Uncharacterized protein ZK757.4 OS=Caenorhabditis ... [more]
PFA3_ASPFU2.148e-1435.83Palmitoyltransferase pfa3 OS=Aspergillus fumigatus... [more]
ZDH19_ARATH3.664e-1435.00Probable S-acyltransferase At4g24630 OS=Arabidopsi... [more]
ZDHC9_ARATH4.785e-1433.07Probable S-acyltransferase At3g26935 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
back to top