FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH23_ARATH (Probable S-acyltransferase At5g41060 OS=Arabidopsis thaliana GN=At5g41060 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  338 FGFSIIILFHILLVMLVWSYVMVVFW---DPGSVPENWRXXXXXXXXXXGVNLEAGTS-SQSLDNVGP-DARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +G SII+   + +V  ++  ++++     DPG +P N              N  +GTS +  L  V   +  G    V +CD C   +PPRC HCS+C  CV + DHHC WV  C+  RNY  FF
Sbjct:   75 WGVSIIL---VAVVFTIYDLILLMLTSGRDPGIIPRNSHPPEPEVVDG---NTGSGTSQTPRLPRVKEVEVNGKVFKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIAQRNYRFFF 193          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC8_MOUSE (Probable palmitoyltransferase ZDHHC8 OS=Mus musculus GN=Zdhhc8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 41/110 (37.27%), Postives = 52/110 (47.27%), Query Frame = 2
Query:  368 ILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            IL + ++ ++ M  F DPG  P                + E    +    NV  D RG    + +C  C   +PPRC HCSVC  CV   DHHC WV NC+G RNY  FF
Sbjct:   53 ILFLFVLANFSMATFMDPGVFPR----------ADEDEDKEDDFRAPLYKNV--DVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFF 150          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC7_RAT (Palmitoyltransferase ZDHHC7 OS=Rattus norvegicus GN=Zdhhc7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  338 FGFSII--ILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            F +S++  +LF+ L V+ + S++  +  DPG+VP+                     + + ++++      P   +  C +C   KP R HHCS+C+RC+ KMDHHC WV NCVG +N   F
Sbjct:   76 FWYSVVNGVLFNCLAVLALSSHLRTMLTDPGAVPKG------------------NATKEYMESL---QLKPGEVIYKCPKCCCIKPERAHHCSICKRCIRKMDHHCPWVNNCVGEKNQRFF 175          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC7_MOUSE (Palmitoyltransferase ZDHHC7 OS=Mus musculus GN=Zdhhc7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  338 FGFSII--ILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            F +S++  +LF+ L V+ + S++  +  DPG+VP+                     + + ++++      P   +  C +C   KP R HHCS+C+RC+ KMDHHC WV NCVG +N   F
Sbjct:   76 FWYSVVNGVLFNCLAVLALSSHLRTMLTDPGAVPKG------------------NATKEYMESL---QLKPGEVIYKCPKCCCIKPERAHHCSICKRCIRKMDHHCPWVNNCVGEKNQRFF 175          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC3_MOUSE (Palmitoyltransferase ZDHHC3 OS=Mus musculus GN=Zdhhc3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  338 FGFSII--ILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            + +SII  I+F++L  + + S+   +  DPG+VP+                     + + ++++      P + V  C +C + KP R HHCSVC+RC+ KMDHHC WV NCVG  N   F
Sbjct:   73 YAYSIINGIVFNLLAFLALASHCRAMLTDPGAVPKG------------------NATKEFIESL---QLKPGQVVYKCPKCCSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYF 172          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH16_MOUSE (Probable palmitoyltransferase ZDHHC16 OS=Mus musculus GN=Zdhhc16 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  527 PDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            P  R    +V  C +C   KP R HHCS+C RCVLKMDHHC W+ NCVG  N+  FF
Sbjct:  145 PQGRNDIATVSICKKCIYPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFF 201          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH16_MACFA (Probable palmitoyltransferase ZDHHC16 OS=Macaca fascicularis GN=ZDHHC16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  527 PDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            P  R    +V  C +C   KP R HHCS+C RCVLKMDHHC W+ NCVG  N+  FF
Sbjct:  145 PQGRNDIATVSICKKCIYPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFF 201          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH16_HUMAN (Probable palmitoyltransferase ZDHHC16 OS=Homo sapiens GN=ZDHHC16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  527 PDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            P  R    +V  C +C   KP R HHCS+C RCVLKMDHHC W+ NCVG  N+  FF
Sbjct:  145 PQGRNDIATVSICKKCIYPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFF 201          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC6_MOUSE (Probable palmitoyltransferase ZDHHC6 OS=Mus musculus GN=Zdhhc6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 39/123 (31.71%), Postives = 56/123 (45.53%), Query Frame = 2
Query:  326 VHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +H+  G    I+     VM++++Y   +F  PG VP  W+                           P+    S  + +C  CQ  K PR HHC  C RCV+KMDHHC W+ NC G +N++ F
Sbjct:   49 LHTTGGSVNFIMLINWTVMILYNYFNAMFAGPGFVPRGWK---------------------------PEKSQDSMYLQYCKVCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGHQNHASF 144          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC8_PANTR (Probable palmitoyltransferase ZDHHC8 OS=Pan troglodytes GN=ZDHHC8 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 2
Query:  368 ILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            I+ + ++ ++ M  F DPG  P                + E    +    NV  D RG    + +C  C   +PPRC HCSVC  CV   DHHC WV NC+G RNY  FF
Sbjct:   53 IIFLFVLANFSMATFMDPGVFPR----------ADEDEDKEDDFRAPLYKNV--DVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFF 150          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ZDH23_ARATH4.785e-1434.40Probable S-acyltransferase At5g41060 OS=Arabidopsi... [more]
ZDHC8_MOUSE6.249e-1437.27Probable palmitoyltransferase ZDHHC8 OS=Mus muscul... [more]
ZDHC7_RAT6.249e-1432.23Palmitoyltransferase ZDHHC7 OS=Rattus norvegicus G... [more]
ZDHC7_MOUSE6.249e-1432.23Palmitoyltransferase ZDHHC7 OS=Mus musculus GN=Zdh... [more]
ZDHC3_MOUSE6.249e-1433.88Palmitoyltransferase ZDHHC3 OS=Mus musculus GN=Zdh... [more]
ZDH16_MOUSE6.249e-1454.39Probable palmitoyltransferase ZDHHC16 OS=Mus muscu... [more]
ZDH16_MACFA6.249e-1454.39Probable palmitoyltransferase ZDHHC16 OS=Macaca fa... [more]
ZDH16_HUMAN6.249e-1454.39Probable palmitoyltransferase ZDHHC16 OS=Homo sapi... [more]
ZDHC6_MOUSE8.162e-1431.71Probable palmitoyltransferase ZDHHC6 OS=Mus muscul... [more]
ZDHC8_PANTR1.066e-1336.36Probable palmitoyltransferase ZDHHC8 OS=Pan troglo... [more]

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Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
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