FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875678_ssr457 microsatellite FC875678_ssr457:457..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH21_ARATH (Probable S-acyltransferase At5g05070 OS=Arabidopsis thaliana GN=At5g05070 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 38/130 (29.23%), Postives = 57/130 (43.85%), Query Frame = 2
Query:  335 FFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRS----------VGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            FF ++++    IL ++     ++    DPG +P N             +      S + ++N  P+ + P             V FCD C   +PPR  HCS+C  CV + DHHC WV  C+  RNY  F
Sbjct:   91 FFNYTVLASGFILTLLDFTFLMLTSARDPGIIPRNKTSMILEDDSDSSLT----QSMEWVNNKTPNLKIPRTKDVFVNGYTIKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIARRNYPFF 216          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC2_DICDI (Putative ZDHHC-type palmitoyltransferase 2 OS=Dictyostelium discoideum GN=DDB_G0274739 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 2
Query:  317 RGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRS-VGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +G +HSF   +++I        ++ +Y +    DPGS  +                    T S S   + P +   S     +C++C + KP R HHC  C RCVL+MDHHC W+ NC+G  N   F
Sbjct:  207 KGKIHSFISMALVI-------QMLCNYYLCSTTDPGSFKD--------------------TISPSYYLLHPISSTDSNDHKKWCNKCNHQKPERAHHCRYCNRCVLRMDHHCQWLQNCIGLFNQKYF 306          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH14_MOUSE (Probable palmitoyltransferase ZDHHC14 OS=Mus musculus GN=Zdhhc14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  347 SIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDAR-------GPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +I ++  IL   ++ + +   F DPG +P               +++  GTSS       P  R       G +  + +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:   93 AIPVVGGILFFFVMGTLLRTSFSDPGVLPR--ATPDEAADLERQIDIANGTSS---GGYRPPPRTKEVVINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVEQFDHHCPWVGNCVGKRNYRFFY 211          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH14_HUMAN (Probable palmitoyltransferase ZDHHC14 OS=Homo sapiens GN=ZDHHC14 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 39/117 (33.33%), Postives = 55/117 (47.01%), Query Frame = 2
Query:  368 ILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDAR-------GPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            IL   ++ + +   F DPG +P               +++  GTSS       P  R       G +  + +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:  100 ILFFFVMGTLLRTSFSDPGVLPR--ATPDEAADLERQIDIANGTSS---GGYRPPPRTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFFY 211          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_CRYNE (Palmitoyltransferase PFA4 OS=Cryptococcus neoformans GN=PFA4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 35/115 (30.43%), Postives = 54/115 (46.96%), Query Frame = 2
Query:  350 IIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +++  ++   M+ W+Y + V   PGSVPE WR          G+ ++ GT +                  +C  C++ KPPR HHC  C+ C +   +HC W+ NCVG  N   F
Sbjct:   45 LLVPLNLAAFMIFWNYRLCVITSPGSVPEGWRPNIGAMD---GMEVKKGTHTPR----------------YCKNCEHYKPPRAHHCRQCKTCWV---NHCPWIGNCVGFYNQGHF 137          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC1_DICDI (Putative ZDHHC-type palmitoyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0276997 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 2
Query:  515 DNVGPDARGP----------SRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFFF 700
            D   PD R P           + + +C+ C   +PPR +HC +C  CV + DHHC WV NC+G RNY  F +
Sbjct:   91 DIFAPDHRQPLFKKITVKDTKQEIKWCETCCLYRPPRANHCGICNNCVERFDHHCPWVGNCIGRRNYQTFLY 162          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ERFB_ASHGO (Palmitoyltransferase ERF2 OS=Ashbya gossypii GN=ERF2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++L +    +   S++     DPG++P N             +   +  +  S     P A  P R + +C  C+  +PPR  HC+VC  C+L  DHHC W+ NC+G RN+  F
Sbjct:  123 VVLCYYFWTLCFASFISTGATDPGTLPRNIHLAQLQDDYKLPLEYYSIITLPS-----PVANAPVR-LKYCTTCRIWRPPRASHCAVCDSCILSFDHHCDWLNNCIGQRNHRYF 230          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC9_PONAB (Palmitoyltransferase ZDHHC9 OS=Pongo abelii GN=ZDHHC9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:  140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFY 185          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC9_MOUSE (Palmitoyltransferase ZDHHC9 OS=Mus musculus GN=Zdhhc9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:  140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFY 185          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC9_HUMAN (Palmitoyltransferase ZDHHC9 OS=Homo sapiens GN=ZDHHC9 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:  140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFY 185          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ZDH21_ARATH5.849e-1229.23Probable S-acyltransferase At5g05070 OS=Arabidopsi... [more]
ZDHC2_DICDI7.639e-1230.71Putative ZDHHC-type palmitoyltransferase 2 OS=Dict... [more]
ZDH14_MOUSE9.977e-1232.26Probable palmitoyltransferase ZDHHC14 OS=Mus muscu... [more]
ZDH14_HUMAN9.977e-1233.33Probable palmitoyltransferase ZDHHC14 OS=Homo sapi... [more]
PFA4_CRYNE9.977e-1230.43Palmitoyltransferase PFA4 OS=Cryptococcus neoforma... [more]
ZDHC1_DICDI2.223e-1138.89Putative ZDHHC-type palmitoyltransferase 1 OS=Dict... [more]
ERFB_ASHGO2.223e-1129.82Palmitoyltransferase ERF2 OS=Ashbya gossypii GN=ER... [more]
ZDHC9_PONAB2.903e-1154.35Palmitoyltransferase ZDHHC9 OS=Pongo abelii GN=ZDH... [more]
ZDHC9_MOUSE2.903e-1154.35Palmitoyltransferase ZDHHC9 OS=Mus musculus GN=Zdh... [more]
ZDHC9_HUMAN2.903e-1154.35Palmitoyltransferase ZDHHC9 OS=Homo sapiens GN=ZDH... [more]

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Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
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