FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875678_ssr457 microsatellite FC875678_ssr457:457..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC9_BOVIN (Palmitoyltransferase ZDHHC9 OS=Bos taurus GN=ZDHHC9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            +C  C+  +PPR  HCS+C  CV + DHHC WV NCVG RNY  F+
Sbjct:  140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFY 185          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: AKR1_GIBZE (Palmitoyltransferase AKR1 OS=Gibberella zeae GN=AKR1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 39/114 (34.21%), Postives = 50/114 (43.86%), Query Frame = 2
Query:  359 LFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFFF 700
            LF +     V+ Y+  + +DPG VP+             G+  +     + L      A+       FC  C    P R  HC  CQRCV K DHHC WV NCVG  N+  FFF
Sbjct:  379 LFALFFGFTVYFYIASMRYDPGFVPK-----------MNGIAEQKAVIDELL------AQWKYDETNFCVTCMIQTPLRSKHCRRCQRCVAKHDHHCPWVYNCVGINNHRHFFF 475          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: AKR1_CRYNE (Palmitoyltransferase AKR1 OS=Cryptococcus neoformans GN=AKR1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 38/113 (33.63%), Postives = 48/113 (42.48%), Query Frame = 2
Query:  362 FHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVG--FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            F I+ V   W++   +  DPG VP+                   G     +  V  D     R  G  FC  C   KP R  HC  C RCV + DHHC W+ NCVGA+N+  F
Sbjct:  406 FIIMFVGCCWTFWTAIVTDPGFVPK-------------------GQQDAEIKEVLEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKNHRSF 499          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_NEUCR (Palmitoyltransferase PFA4 OS=Neurospora crassa GN=pfa-4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 37/113 (32.74%), Postives = 51/113 (45.13%), Query Frame = 2
Query:  356 ILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++F+ILLV L  +Y      DPG     ++            N   G             RGP ++  +C +C   KPPR HHC  C RC+ +MDHHC W  NCV  + +  F
Sbjct:   53 LIFNILLVCLWLTYYQACTVDPGQ----YKFPPKEKEDGDNNNKRGG-------------RGPQKAK-WCKKCDAPKPPRAHHCRHCARCIPRMDHHCPWTGNCVSLQTFPHF 147          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_KLULA (Palmitoyltransferase PFA4 OS=Kluyveromyces lactis GN=PFA4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 34/121 (28.10%), Postives = 55/121 (45.45%), Query Frame = 2
Query:  332 SFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +F  ++  I +     M+  SY + ++ +PG  P++++                  S++   N             +C +C+  KP R HHC  C +CVL MDHHC W +NCVG  N+  F
Sbjct:   33 NFLSWNEQIFYQTCQTMIWVSYYLAIYTNPGIPPKDFKP-----------------SAEEWHN-------------YCKKCRVYKPERAHHCKTCNQCVLAMDHHCPWTLNCVGHSNFPHF 123          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: SWF1_EMENI (Palmitoyltransferase swf1 OS=Emericella nidulans GN=swf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 2
Query:  563 CDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFFF 700
            C+ C   KP R  HCS C+RCV + DHHC+W+ NCVG  NY  F +
Sbjct:  157 CETCHFLKPARSKHCSYCKRCVSRQDHHCIWLTNCVGLNNYHYFLY 202          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: PFA4_CANGA (Palmitoyltransferase PFA4 OS=Candida glabrata GN=PFA4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +C +C+  KP R HHC  C +CVL MDHHC W +NCVG  N+  F
Sbjct:   79 YCKKCKCYKPERSHHCKTCNQCVLMMDHHCPWTMNCVGYNNFPHF 123          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: AKR1_SCHPO (Palmitoyltransferase akr1 OS=Schizosaccharomyces pombe GN=akr1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 2
Query:  560 FCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +C +C   KPPR +HC  C+RC+ + DHHC W  NCVGARN+  F
Sbjct:  401 YCLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTF 445          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ZDHC9_BOVIN2.903e-1154.35Palmitoyltransferase ZDHHC9 OS=Bos taurus GN=ZDHHC... [more]
AKR1_GIBZE2.903e-1134.21Palmitoyltransferase AKR1 OS=Gibberella zeae GN=AK... [more]
AKR1_CRYNE2.903e-1133.63Palmitoyltransferase AKR1 OS=Cryptococcus neoforma... [more]
PFA4_NEUCR4.952e-1132.74Palmitoyltransferase PFA4 OS=Neurospora crassa GN=... [more]
PFA4_KLULA4.952e-1128.10Palmitoyltransferase PFA4 OS=Kluyveromyces lactis ... [more]
SWF1_EMENI6.467e-1152.17Palmitoyltransferase swf1 OS=Emericella nidulans G... [more]
PFA4_CANGA8.446e-1153.33Palmitoyltransferase PFA4 OS=Candida glabrata GN=P... [more]
AKR1_SCHPO8.446e-1153.33Palmitoyltransferase akr1 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
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