FC875681

Overview
NameFC875681
Unique NameFC875681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.444e-52
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            SA  CG+   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAF 126          

HSP 2 Score: 98.5969 bits (244), Expect = 4.444e-52
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  F  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ+SWNYNY +C           NNPD +
Sbjct:  120 KREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLV 208          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.283e-51
Identity = 65/122 (53.28%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA  CGS   G  C  G CCS+FGWCG T DYC  G CQS C         P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFF
Sbjct:   22 SAEQCGSQAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQC---------PGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFF 134          

HSP 2 Score: 96.2857 bits (238), Expect = 1.283e-51
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  127 KREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 216          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.828e-51
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            A NCGS   G  C  G+CCS+FGWCG T DYC  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFF
Sbjct:   26 AQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFF 138          

HSP 2 Score: 97.0561 bits (240), Expect = 4.828e-51
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  131 KREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 220          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.204e-51
Identity = 60/120 (50.00%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAF 455
            A  CGS   G VCP   CCS+FGWCG T+DYC  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAF 140          

HSP 2 Score: 94.7449 bits (234), Expect = 8.204e-51
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC    KYYGRGPIQLS+N+NY
Sbjct:  134 KREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.025e-50
Identity = 62/123 (50.41%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFF
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFF 128          

HSP 2 Score: 101.293 bits (251), Expect = 4.025e-50
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  121 KREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 210          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.245e-50
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  117 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            CGS   G +CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF
Sbjct:   23 CGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAF 137          

HSP 2 Score: 92.0485 bits (227), Expect = 5.245e-50
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPCRG--KYYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    KYYGRGPIQ+S+NYNY
Sbjct:  131 KREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY 204          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.161e-49
Identity = 64/120 (53.33%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            A  CG+   G  CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF
Sbjct:   32 AEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAF 147          

HSP 2 Score: 92.0485 bits (227), Expect = 1.161e-49
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 642
            K ++  F  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    KYYGRGPIQLS+N+NY
Sbjct:  141 KREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY 212          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.161e-49
Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            A  CGS   G +CP   CCS +GWCG T+DYC +GCQS C+   CG      G  G GG  G      ++S+++FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAF 144          

HSP 2 Score: 93.9745 bits (232), Expect = 1.161e-49
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 642
            K ++  F  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC    KY+GRGPIQLS+NYNY
Sbjct:  138 KREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGPIQLSYNYNY 209          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.163e-49
Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA  CG    G  C  G CCS FGWCG T DYC  G CQS C      +  P  G    GG++G +IS  MF+ +L++RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFF
Sbjct:   17 SAEQCGKQAGGARCAAGLCCSNFGWCGNTNDYCGPGKCQSQCPSGPSPK-PPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFF 138          

HSP 2 Score: 101.293 bits (251), Expect = 1.163e-49
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  131 KREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 220          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.353e-49
Identity = 63/123 (51.22%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCG----ECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            A  CGS   G  CP   CCSRFGWCG T+DYC +GCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAF 138          

HSP 2 Score: 93.2041 bits (230), Expect = 3.353e-49
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK YYGRGPIQLS NYNY
Sbjct:  132 KREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 203          
The following BLAST results are available for this feature:
BLAST of FC875681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_PEA4.444e-5250.83Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_TOBAC1.283e-5153.28Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_SOLTU4.828e-5151.64Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI12_ORYSJ8.204e-5150.00Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_SOLTU4.025e-5050.41Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ5.245e-5050.00Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ1.161e-4953.33Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ1.161e-4950.00Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU1.163e-4948.78Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SECCE3.353e-4951.22Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionC31401F06EF CTVClemen1 Citrus clementina cDNA clone C31401F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875681 ID=FC875681; Name=FC875681; organism=Citrus clementina; type=EST; length=712bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGG
AGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGT
GTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAA
GGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGA
CGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGA
AGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCC
AGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTTC
TGCTACTGATCC
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