FC875681

Overview
NameFC875681
Unique NameFC875681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.677e-49
Identity = 61/122 (50.00%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF
Sbjct:   17 SAEQCGSQAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAF 127          

HSP 2 Score: 99.3673 bits (246), Expect = 9.677e-49
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  F AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  121 KREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 210          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.679e-49
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C               G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFF
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQC-------------PGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFF 126          

HSP 2 Score: 98.5969 bits (244), Expect = 9.679e-49
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGW  AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  119 KREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQG-SPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 208          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.261e-48
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDG-GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA  CG    G  CP G CCS FGWCG T DYC  G CQS C         P   T G   G++  IIS  MF+ +L++RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFF
Sbjct:   22 SAEQCGKQAGGARCPSGMCCSNFGWCGNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFF 144          

HSP 2 Score: 94.7449 bits (234), Expect = 1.261e-48
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  FFAQT HETTGGW  AP G YAWGYC+ RE G   S YC     +PC    KYYGRGPIQ+S+NYNY  C           NNPD +
Sbjct:  137 KREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLV 226          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.640e-48
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  105 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            SA  CGS   G +C  G CCS+FGWCG T +YC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF
Sbjct:   21 SAEQCGSQAGGALCASGLCCSKFGWCGNTNEYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAF 131          

HSP 2 Score: 98.9821 bits (245), Expect = 3.640e-48
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K ++  F AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPD +
Sbjct:  125 KREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 214          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.184e-48
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  117 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD--PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            CGS   G +CP   CCS++GWCG T+DYC  GCQS C+    G C   P   ++G G  +  IIS  +F+ +L +RND+ C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF
Sbjct:   21 CGSQAGGALCPNCLCCSQYGWCGSTSDYCGAGCQSQCS----GGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAF 134          

HSP 2 Score: 95.9005 bits (237), Expect = 6.184e-48
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD--PNYPCRG--KYYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGWP AP G Y+WGYCF  E    +  YC+  P +PC    KYYGRGPIQ+++NYNY
Sbjct:  128 KREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY 200          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-47
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            A  CGS   G VCP G CCS+FG+CG T  YC +GCQS C         P   T G  G++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF
Sbjct:   23 AEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTGG--GDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAF 138          

HSP 2 Score: 92.0485 bits (227), Expect = 1.369e-47
Identity = 49/92 (53.26%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            K++L  F AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC    KYYGRGPIQL+ NYNY              NNPD L
Sbjct:  132 KKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLL 220          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 1.784e-47
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  108 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            A  CGS   G  CP   CCSRFGWCG +T YC +GCQS C+    G   P   T   GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AF  FG +G    RKRE+AAF
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCG-STPYCGDGCQSQCSGCGGGST-PVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAF 135          

HSP 2 Score: 93.2041 bits (230), Expect = 1.784e-47
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK YYGRGPIQLS NYNY
Sbjct:  129 KREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 200          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 5.321e-40
Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  102 GSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGE----LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G      G  G GG     L  II   MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF
Sbjct:   19 GSAEQCGQQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 143          

HSP 2 Score: 46.9802 bits (110), Expect = 5.321e-40
Identity = 20/44 (45.45%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYC-FNREVGAASSD 564
            K ++  F  QT HET G WP A G +Y WGYC  N   G    D
Sbjct:  137 KREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHMNYNYGLCGDD 180          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.526e-39
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRC 651
            K +L  F  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QLSWNYNY  C
Sbjct:   54 KRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC 128          

HSP 2 Score: 80.8777 bits (198), Expect = 7.526e-39
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  285 KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAF 60          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.661e-38
Identity = 59/122 (48.36%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  111 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          

HSP 2 Score: 67.781 bits (164), Expect = 3.661e-38
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 642
            K ++  F AQT H T+GG        Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+++NYNY
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY 213          
The following BLAST results are available for this feature:
BLAST of FC875681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_SOLTU9.677e-4950.00Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU9.679e-4949.59Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.261e-4849.59Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIC_SOLLC3.640e-4848.36Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_ORYSJ6.184e-4847.46Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA1.369e-4747.06Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_HORVU1.784e-4750.4226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_POPTR5.321e-4055.20Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_CARPA7.526e-3964.47Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI7_ORYSJ3.661e-3848.36Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31401F06EF CTVClemen1 Citrus clementina cDNA clone C31401F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875681 ID=FC875681; Name=FC875681; organism=Citrus clementina; type=EST; length=712bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGG
AGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGT
GTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAA
GGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGA
CGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGA
AGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCC
AGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTTC
TGCTACTGATCC
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