FC875681

Overview
NameFC875681
Unique NameFC875681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.977e-25
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = 3
Query:  114 NCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAG--DGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            NCG    C    CCS+FG+CG T  YC  GC+S       G C    GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          

HSP 2 Score: 61.2326 bits (147), Expect = 1.977e-25
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1
Query:  526 YCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRC 651
            +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC 182          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.572e-25
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  105 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +A +CG    C   +CCS++G+CG  +DYC  GCQ+           P D  A +   +  I++ + F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFF
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          

HSP 2 Score: 55.0694 bits (131), Expect = 2.572e-25
Identity = 29/74 (39.19%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNY 642
            K ++  FFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q+SWN+NY
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY 179          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.367e-25
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  276 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 78          

HSP 2 Score: 53.5286 bits (127), Expect = 4.367e-25
Identity = 31/69 (44.93%), Postives = 37/69 (53.62%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 642
            K+++  FF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQL+   NY
Sbjct:   71 KKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLTGQSNY 127          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.249e-24
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  105 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFF
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          

HSP 2 Score: 52.373 bits (124), Expect = 1.249e-24
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNY 642
            K ++  FFA   HET               +C+  E+  +++ YCD +   +PC    KYYGRGP+Q+SWNYNY
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNA-YCDASNRQWPCAAGQKYYGRGPLQISWNYNY 190          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.760e-24
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  279 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +G I++  +F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85          

HSP 2 Score: 57.3806 bits (137), Expect = 2.760e-24
Identity = 32/69 (46.38%), Postives = 38/69 (55.07%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 642
            K+++  FF QT HETTGG   +P G YA GYCF RE     +            YYGRGPIQL+   NY
Sbjct:   78 KKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLTGQSNY 134          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.916e-24
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  279 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFF 86          

HSP 2 Score: 50.0618 bits (118), Expect = 7.916e-24
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            ++++  FF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY +            NNPD +
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLV 151          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.027e-23
Identity = 42/122 (34.43%), Postives = 59/122 (48.36%), Query Frame = 3
Query:  105 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFF
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          

HSP 2 Score: 62.003 bits (149), Expect = 1.027e-23
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNY 642
            K ++  FFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q+SWNYNY
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.027e-23
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 3
Query:  105 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQS-----NCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +A NCG    C  G CCS++G+CG T  YC +GCQS     +  +   G      G AG G  +  +++   F   ++ +    C  + FYT  +F+ AA+++  F N       KREIAAFF
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNG-IKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          

HSP 2 Score: 57.3806 bits (137), Expect = 1.027e-23
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNY 642
            K ++  FFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+NY
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY 195          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.339e-23
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  255 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFF 458
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92          

HSP 2 Score: 60.4622 bits (145), Expect = 1.339e-23
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  433 VKEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 642
            ++ +L  FF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQL+   NY
Sbjct:   84 IRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNY 142          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  102 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 398
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
The following BLAST results are available for this feature:
BLAST of FC875681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_BRANA1.977e-2538.46Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ2.572e-2538.14Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC4.367e-2557.38Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_MAIZE1.249e-2438.66Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_PETHY2.760e-2456.67Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC7.916e-2458.33Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI5_ORYSJ1.027e-2334.43Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.027e-2334.15Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_ORYSJ1.339e-2350.72Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_POPTR1.521e-2354.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionC31401F06EF CTVClemen1 Citrus clementina cDNA clone C31401F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875681 ID=FC875681; Name=FC875681; organism=Citrus clementina; type=EST; length=712bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGG
AGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGT
GTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAA
GGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGA
CGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGA
AGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCC
AGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTTC
TGCTACTGATCC
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