FC875681

Overview
NameFC875681
Unique NameFC875681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.270e-23
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  279 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFF 86          

HSP 2 Score: 50.0618 bits (118), Expect = 2.270e-23
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            ++++  FF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY +            NNPD +
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLV 151          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 3.810e-23
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  117 CGSGV---VCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            CG+ V    C    CCS  GWCG   DYC    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAF 186          

HSP 2 Score: 45.4394 bits (106), Expect = 3.810e-23
Identity = 25/72 (34.72%), Postives = 35/72 (48.61%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLSWNYNY 642
            K ++  F A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQL+ N+NY
Sbjct:  180 KREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY 250          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.441e-23
Identity = 48/127 (37.80%), Postives = 59/127 (46.46%), Query Frame = 3
Query:  108 AGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDP----------DDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            A NCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          

HSP 2 Score: 53.5286 bits (127), Expect = 8.441e-23
Identity = 32/76 (42.11%), Postives = 36/76 (47.37%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLSWNYNY 642
            K ++  FFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QLSWNYNY
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY 198          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.423e-22
Identity = 43/118 (36.44%), Postives = 58/118 (49.15%), Query Frame = 3
Query:  105 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            SA NCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          

HSP 2 Score: 55.0694 bits (131), Expect = 2.423e-22
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1
Query:  526 YCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLSWNYNY 642
            +C+  E+  AS DYCD      YPC     Y+GRGPIQLSWN+NY
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY 180          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.388e-21
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  150 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 458
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+F
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          

HSP 2 Score: 49.2914 bits (116), Expect = 4.388e-21
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYL 645
            K ++  +FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QLSWNYNY+
Sbjct:   97 KREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYI 157          
BLAST of FC875681 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.266e-20
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1
Query:  436 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 642
            K ++  F AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+S+NYNY
Sbjct:   45 KREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNY 93          

HSP 2 Score: 58.151 bits (139), Expect = 1.266e-20
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  279 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 455
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAF 51          
The following BLAST results are available for this feature:
BLAST of FC875681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIQ_TOBAC2.270e-2356.67Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI3.810e-2337.61Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU8.441e-2337.80Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_PHAVU2.423e-2236.44Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA4.388e-2140.38Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIT_AVESA1.266e-2046.38Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31401F06EF CTVClemen1 Citrus clementina cDNA clone C31401F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875681 ID=FC875681; Name=FC875681; organism=Citrus clementina; type=EST; length=712bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGG
AGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGT
GTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAA
GGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGA
CGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGA
AGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCC
AGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTTC
TGCTACTGATCC
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