FC875685

Overview
NameFC875685
Unique NameFC875685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:367..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.461e-86
Identity = 157/209 (75.12%), Postives = 170/209 (81.34%), Query Frame = 1
Query:   58 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQ VLMGAVEGY +AGG LGEV DPLY GGSFDPLGL DDP  FA
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFA 206          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.407e-84
Identity = 154/211 (72.99%), Postives = 173/211 (81.99%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA Q VLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP  FA
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.407e-84
Identity = 154/211 (72.99%), Postives = 173/211 (81.99%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA Q VLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP  FA
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.838e-84
Identity = 156/212 (73.58%), Postives = 173/212 (81.60%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MAT  +   S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQ VLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP AFA
Sbjct:    1 MATCAIQ-QSAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFA 207          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.983e-84
Identity = 154/212 (72.64%), Postives = 172/212 (81.13%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MATS +   S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA Q VLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDP AFA
Sbjct:    1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFA 207          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.191e-83
Identity = 155/211 (73.46%), Postives = 170/211 (80.57%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MAT++   SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQ VLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDP A A
Sbjct:    1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACA 208          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.008e-82
Identity = 154/212 (72.64%), Postives = 170/212 (80.19%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MATS +   S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA Q VLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP AFA
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFA 207          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.934e-82
Identity = 143/178 (80.34%), Postives = 157/178 (88.20%), Query Frame = 1
Query:  142 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA Q VLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP AFA
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFA 179          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.004e-82
Identity = 145/177 (81.92%), Postives = 158/177 (89.27%), Query Frame = 1
Query:  145 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA Q VLMG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDP AFA
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFA 206          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.115e-81
Identity = 155/212 (73.11%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   58 MATSTMALSSSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675
            MATS +   S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA Q VLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP +FA
Sbjct:    1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFA 207          
The following BLAST results are available for this feature:
BLAST of FC875685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB48_MAIZE7.461e-8675.12Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_ORYSJ1.407e-8472.99Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.407e-8472.99Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.838e-8473.58Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC6.983e-8472.64Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH1.191e-8373.46Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP1.008e-8272.64Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.934e-8280.34Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI5.004e-8281.92Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.115e-8173.11Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC31401F11EF CTVClemen1 Citrus clementina cDNA clone C31401F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875685 ID=FC875685; Name=FC875685; organism=Citrus clementina; type=EST; length=675bp
GAATTCCCTCTCAACACTCGAACACTAGAGCTCACCAACAACTCTGATCA
TTGCAAAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCA
AGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGC
ATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGCAGCCCGTG
GTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCC
CAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCC
GGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGT
CATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGG
AGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAG
GCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCC
AAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGCGG
TCTTGATGGGAGCTGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGT
GAAGTGACCGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCCGGAGCTTTTGCT
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