FC875685
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 502 SLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 SL+HAQSILAIWACQ VLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFA Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 502 SLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 SL+HAQSILAIWACQ VLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFA Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 502 SLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 SL+HAQSILAIWACQ VLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFA Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 58
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 502 SLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 SL+HAQSILAIWACQ VLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFA Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 502 SLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 SL+HAQSILAIWACQ VLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFA Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22 Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 1 Query: 481 LDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPGAFA 675 LDYLGNPSL+HAQSILAIWA Q +LMGAVEGYR+AG GPLGE D LYPGGSFDPL DP AFA Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFA 66
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19 Identity = 71/207 (34.30%), Postives = 96/207 (46.38%), Query Frame = 1 Query: 58 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAF 672 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E R + YPGG+FDPLG + DP F Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKF 184
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17 Identity = 58/154 (37.66%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 208 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQAVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 648 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA + G V I TD YPGG FDPLG Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17 Identity = 61/167 (36.53%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 169 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQAVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 648 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA + G V I TD YPGG FDPLG Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16 Identity = 56/146 (38.36%), Postives = 73/146 (50.00%), Query Frame = 1 Query: 241 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAF 672 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE R + YPGG+FDPLG + DP F Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKF 185 The following BLAST results are available for this feature:
BLAST of FC875685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875685 ID=FC875685; Name=FC875685; organism=Citrus clementina; type=EST; length=675bpback to top |