FC875685

Overview
NameFC875685
Unique NameFC875685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:367..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 57/141 (40.43%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  247 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADD 660
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A Q V    +E +R  GG L    E  D  YPG  FDPL L  +
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE 493          

HSP 2 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 52/144 (36.11%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  238 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQAVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADD 660
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +      +    E +R  GG     GE+ D  YPG  FDPL L  D
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD 308          
BLAST of FC875685 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  502 SLIHAQSILAIWACQAVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPGAF 672
            +LIHA+S+LAI A Q +LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP  F
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTF 63          
The following BLAST results are available for this feature:
BLAST of FC875685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LH18_EUGGR7.618e-1440.43Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_EUGGR1.697e-1366.67Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionC31401F11EF CTVClemen1 Citrus clementina cDNA clone C31401F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875685 ID=FC875685; Name=FC875685; organism=Citrus clementina; type=EST; length=675bp
GAATTCCCTCTCAACACTCGAACACTAGAGCTCACCAACAACTCTGATCA
TTGCAAAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCA
AGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGC
ATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGCAGCCCGTG
GTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCC
CAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCC
GGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGT
CATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGG
AGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAG
GCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCC
AAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGCGG
TCTTGATGGGAGCTGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGT
GAAGTGACCGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCCGGAGCTTTTGCT
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