FC875687

Overview
NameFC875687
Unique NameFC875687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 100/143 (69.93%), Postives = 115/143 (80.42%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIAN+QGNR TPS+V FT  ERLIGDAAKNQ A+NP NTVFDAKRLIGRRF D SVQ DMK WPFKVI    + P+I V Y  E K F+ +EIS+MVL KM+EIAEA +G  ++ AV+TVPAYFND+QRQATKDAG I+GLNV
Sbjct:   30 IIANEQGNRVTPSFVAFTPQERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGN-PVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNV 171          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 100/143 (69.93%), Postives = 115/143 (80.42%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIAN+QGNR TPS+V FT  ERLIGDAAKNQ A+NP NTVFDAKRLIGRRF D SVQ DMK WPFKVI    + P+I V Y  E K F+ +EIS+MVL KM+EIAEA +G  ++ AV+TVPAYFND+QRQATKDAG I+GLNV
Sbjct:   30 IIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGN-PVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNV 171          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP75_SCHPO (Heat shock protein sks2 OS=Schizosaccharomyces pombe GN=sks2 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 100/143 (69.93%), Postives = 114/143 (79.72%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            II NDQG RTTPS+V FT+TERL+GDAAKNQ AMNP NTVFDAKRLIGRR+ D   Q D+K WPFKVI      P I VNY GE+KQF A+EIS+MVL KM+EI+EA L   ++ AV+TVPAYF+DSQR ATKDAG IAGLNV
Sbjct:   30 IIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNG-IPTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNV 171          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ NDQGNR TPSYV FTD ERL+GDAAKNQ A NP  T+FD KRLIGR+FSD  VQ D+K +P+KV++   DKP++ V  KGEEK F  EEIS+M+L KM+E AE YLG  + +AVVTVPAYFND+QRQATKDAG+IAGLNV
Sbjct:   63 ILVNDQGNRITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVS-KDDKPVVKVEVKGEEKTFTPEEISAMILGKMKETAEGYLGKKVTHAVVTVPAYFNDNQRQATKDAGMIAGLNV 204          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP75_ZYGRC (Heat shock protein SSB OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=SSB PE=3 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 8.790e-50
Identity = 99/143 (69.23%), Postives = 114/143 (79.72%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIAN+QGNR TPS+V FT  ERLIGDAAKNQ A+NP NTVFDAKRLIGRRF D SVQ D K WPFK+I      P++ V Y GE K F+ +EISSMVL KM+EIAEA +G  ++ AV+TVPAYFND+QRQATKDAG I+GLNV
Sbjct:   30 IIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPENTVFDAKRLIGRRFDDESVQKDRKTWPFKLI-DVEGNPVVEVQYLGETKTFSPQEISSMVLTKMKEIAEAKIGQKVEKAVITVPAYFNDAQRQATKDAGSISGLNV 171          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HS7C4_DICDI (Heat shock cognate 70 kDa protein 4 OS=Dictyostelium discoideum GN=DDB_G0293678 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.790e-50
Identity = 99/144 (68.75%), Postives = 114/144 (79.17%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGP-ADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIANDQGNRTTPSYV F + E LIGD A NQVAMNP NT+FD KRL GR++SD+ VQ DMKLWPFKVIA    DKP+I V++KGE K F+ EEISSMVL KM+EI E +LG  + +AV+TVPAYFND QR ATK AG I+ LNV
Sbjct:   26 IIANDQGNRTTPSYVSFNNRECLIGDDAMNQVAMNPVNTIFDVKRLFGRKYSDSVVQSDMKLWPFKVIANKFDDKPLIQVDFKGETKTFSPEEISSMVLSKMKEIVEQHLGEPVTDAVITVPAYFNDRQRHATKYAGTISNLNV 169          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.148e-49
Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTE--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIANDQGNR TPSYV F+  +  RLIGDAAKNQ+ +NP NT+FDAKRLIGR ++D +VQ D+K WPFKVI   ++KP + V    + KQF  EE+S+MVL+KM+EIAE+YLG  +KNAVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   57 IIANDQGNRITPSYVAFSGDQGDRLIGDAAKNQLTINPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVI-DKSNKPSVEVKVGSDNKQFTPEEVSAMVLVKMKEIAESYLGKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNV 200          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.362e-49
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIAN+QGNR TPS+V FTDTERLIGDAAKNQVAMNP  TVF+AKRLIGR+F+D  VQ DMK +PFK I      P I V ++GE K F  E ISSM   K REIAE+YLG T+ NAVVTVPAYFNDSQRQ TKDAG+IAGLNV
Sbjct:   26 IIANEQGNRNTPSFVAFTDTERLIGDAAKNQVAMNP-QTVFEAKRLIGRKFADPEVQADMKHFPFK-ITDKGGNPKIQVEFRGEGKHFTPEGISSMFRRKKREIAESYLGGTVNNAVVTVPAYFNDSQRQVTKDAGLIAGLNV 166          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 7.441e-49
Identity = 96/145 (66.21%), Postives = 118/145 (81.38%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTE--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIANDQGNR TPSYV F+  +  RLIGDAAKNQ+ +NP NT+FDAKRLIGR ++D +VQ D+K WPFKV+   ++KP + V    + KQF  EE+S+MVL+KM+EIAE+YLG  +K+AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   57 IIANDQGNRITPSYVAFSGEQGDRLIGDAAKNQLTINPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVL-DKSNKPSVEVKVGADNKQFTPEEVSAMVLVKMKEIAESYLGKEVKHAVVTVPAYFNDAQRQATKDAGTIAGLNV 200          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.441e-49
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+AN+QGNR TPSYV FTD ERLIGDAAKNQ+A NPTNT+FD KRLIG +F+D SVQ D+K  PFKV+     KP++ V  KGE++ F  EEIS M+L KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   60 ILANEQGNRITPSYVAFTDDERLIGDAAKNQIAANPTNTIFDIKRLIGLKFNDRSVQRDIKHLPFKVV-DKDGKPVVQVKVKGEDRVFTPEEISGMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNV 201          
The following BLAST results are available for this feature:
BLAST of FC875687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP76_YEAST6.730e-5069.93Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST6.730e-5069.93Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_SCHPO6.730e-5069.93Heat shock protein sks2 OS=Schizosaccharomyces pom... [more]
GRP78_NEUCR6.730e-5067.8378 kDa glucose-regulated protein homolog OS=Neuros... [more]
HSP75_ZYGRC8.790e-5069.23Heat shock protein SSB OS=Zygosaccharomyces rouxii... [more]
HS7C4_DICDI8.790e-5068.75Heat shock cognate 70 kDa protein 4 OS=Dictyosteli... [more]
HSP7C_CAEEL1.148e-4967.59Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP71_PARBA4.362e-4971.33Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP7C_CAEBR7.441e-4966.21Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
GRP78_CANGA7.441e-4967.8378 kDa glucose-regulated protein homolog OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionC31401G01EF CTVClemen1 Citrus clementina cDNA clone C31401G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875687 ID=FC875687; Name=FC875687; organism=Citrus clementina; type=EST; length=433bp
AGATTATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGG
TTCACCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGC
CATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGA
GATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAG
GTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGG
CGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCA
AGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCA
GTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAA
GGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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