FC875687 | Citrus Genome Database

Overview


Name	FC875687
Unique Name	FC875687
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	433

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.112e-44
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ NDQGNR TPSYV FTD ERL+GDAAKNQ A NP  T+FD KRLIGR+F D  VQ D K +P+KV+     KP + V+     K    EE+S+MVL KM+EIAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   73 ILVNDQGNRITPSYVAFTDEERLVGDAAKNQYAANPRRTIFDIKRLIGRKFDDKDVQKDAKHFPYKVV-NKDGKPHVKVDVNQTPKTLTPEEVSAMVLGKMKEIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNV 214

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.112e-44
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ NDQGNR TPSYV FTD ERL+GDAAKNQ A NP  T+FD KRLIGR+F D  VQ D K +P+KV+     KP + V+     K    EE+S+MVL KM+EIAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   73 ILVNDQGNRITPSYVAFTDEERLVGDAAKNQYAANPRRTIFDIKRLIGRKFDDKDVQKDAKHFPYKVV-NKDGKPHVKVDVNQTPKTLTPEEVSAMVLGKMKEIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNV 214

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.112e-44
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ NDQGNR TPSYV FTD ERL+GDAAKNQ A NP  T+FD KRLIGR+F D  VQ D K +P+KV+     KP + V+     K    EE+S+MVL KM+EIAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   73 ILVNDQGNRITPSYVAFTDEERLVGDAAKNQYAANPRRTIFDIKRLIGRKFDDKDVQKDAKHFPYKVV-NKDGKPHVKVDVNQTPKTLTPEEVSAMVLGKMKEIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNV 214

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.577e-43
Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ANDQGNR TPSYV FT  ERLIGDAAKNQ + N  NTVFD KRLIG +++D  VQ ++K  P+K+      KP++ V +  E K F+ EEIS M+L KM+ IAE Y+G  I +AVVTVPAYFND+QRQATKDAG IAGLNV
Sbjct:   73 ILANDQGNRITPSYVAFTPEERLIGDAAKNQASSNVENTVFDIKRLIGLKYNDKMVQKEIKHLPYKIDKKDG-KPVVKVEFNDETKTFSPEEISGMILTKMKSIAEEYMGKKITHAVVTVPAYFNDAQRQATKDAGTIAGLNV 214

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: HSP7C_TRYBB (Heat shock cognate HSP70 protein OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.503e-41
Identity = 86/143 (60.14%), Postives = 101/143 (70.63%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            IIANDQGNRTTPSYV F + E L+GDAAK+  A      +FDAKRLIGR+FSD+ VQ DMK WPFKV  G     ++ V + GE      E+IS+ VL  ++  AE+YLG  +  AVVTVPAYFNDSQRQATKDAG IAGL V
Sbjct:   28 IIANDQGNRTTPSYVAFVNNEVLVGDAAKSHAARGSNGVIFDAKRLIGRKFSDSVVQSDMKHWPFKVEEGEKGGAVMRVEHLGEGMLLQPEQISARVLAYLKSCAESYLGKQVAKAVVTVPAYFNDSQRQATKDAGTIAGLEV 170

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.458e-41
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            I+ N+ GNR TPSYV F D ER +G+AAK +  ++PT TVFD KRLIGR+F D  V  D  L P++++     KP I V  K ++  FA E+IS+MVL KM+EIA+++LG  +KNAVVTVPAYFND+QRQATKDAG IAGLN+
Sbjct:   52 ILNNELGNRITPSYVSFVDGERKVGEAAKLEATVHPTQTVFDVKRLIGRKFDDQEVVKDRSLLPYEIVNNQG-KPNIKVQIKDKDTTFAPEQISAMVLEKMKEIAQSFLGKPVKNAVVTVPAYFNDAQRQATKDAGTIAGLNI 193

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS1 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.525e-38
Identity = 81/143 (56.64%), Postives = 102/143 (71.33%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS VGFTD+ERL+G  AK Q   NP+NTVF  KRLIGRR  DA V+ D KL P+ ++ G      + V  +GE  +++  +IS+ +L KM+E AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEV--RGE--KYSPSQISAFILQKMKETAEAYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.317e-37
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS VGFTD+ERL+G  AK Q   NP+NTVF  KRLIGRR  DA V+ D KL P+ ++ G      + V  +GE  +++  +IS+ +L KM+E AEAYLG ++  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEV--RGE--KYSPSQISAFILQKMKETAEAYLGESVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.719e-37
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS VGFTD+ERL+G  AK Q   NP+NTVF  KRLIGRR  DA V+ D KL P+ ++ G      + V  +GE  +++  +IS+ +L KM+E AEAYLG ++  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYAIVNGGNGDAWVEV--RGE--KYSPSQISAFILQKMKETAEAYLGESVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164

[Close]

BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCA (Chaperone protein dnaK OS=Rhodobacter capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.933e-37
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 3

Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS V +TD ERL+G  AK Q   NPTNTVF  KRLIGRR +DA V+ D KL P+ ++ G      + V  +GE  +F+  ++S+++L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENSEGARTTPSIVAYTDNERLVGQPAKRQAVTNPTNTVFAVKRLIGRRTTDAEVEKDKKLVPYNIVDGGNGDAWVEV--RGE--KFSPAQVSAVILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164

The following BLAST results are available for this feature:

BLAST of FC875687 vs. ExPASy Swiss-Prot

BLAST of FC875687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GRP78_ASPNG	1.112e-44	63.64	78 kDa glucose-regulated protein homolog OS=Asperg...	[more]
GRP78_ASPKA	1.112e-44	63.64	78 kDa glucose-regulated protein homolog OS=Asperg...	[more]
GRP78_ASPAW	1.112e-44	63.64	78 kDa glucose-regulated protein homolog OS=Asperg...	[more]
GRP78_DEBHA	3.577e-43	62.24	78 kDa glucose-regulated protein homolog OS=Debary...	[more]
HSP7C_TRYBB	1.503e-41	60.14	Heat shock cognate HSP70 protein OS=Trypanosoma br...	[more]
GRP78_PLAFO	7.458e-41	58.04	78 kDa glucose-regulated protein homolog OS=Plasmo...	[more]
DNAK_RHOS1	4.525e-38	56.64	Chaperone protein dnaK OS=Rhodobacter sphaeroides ...	[more]
DNAK_RHOS4	1.317e-37	55.94	Chaperone protein dnaK OS=Rhodobacter sphaeroides ...	[more]
DNAK_RHOS5	1.719e-37	55.94	Chaperone protein dnaK OS=Rhodobacter sphaeroides ...	[more]
DNAK_RHOCA	2.933e-37	55.24	Chaperone protein dnaK OS=Rhodobacter capsulatus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31401G01EF CTVClemen1 Citrus clementina cDNA clone C31401G01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875687 ID=FC875687; Name=FC875687; organism=Citrus clementina; type=EST; length=433bp
AGATTATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGG
TTCACCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGC
CATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGA
GATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAG
GTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGG
CGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCA
AGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCA
GTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAA
GGATGCCGGTGTCATTGCTGGGCTTAATGTGAT