FC875687

Overview
NameFC875687
Unique NameFC875687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RICCN (Chaperone protein dnaK OS=Rickettsia conorii GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RICAE (Chaperone protein dnaK OS=Rickettsia africae (strain ESF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPD (Chaperone protein dnaK OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +GNRTTPS V FT + +RL+G AAK Q   NP NT++  KR +GR+F +  V  + KL P+ ++    +        K  +K ++ +EIS+M+L KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   26 VIENSEGNRTTPSMVAFTKSGDRLVGQAAKRQAITNPKNTIYSIKRFVGRKFDE--VPNEKKLAPYDIVNEGGE-----ARVKINDKAYSPQEISAMILQKMKQTAEDFLGEKVSEAVITVPAYFNDAQRQATKDAGRIAGLDV 162          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_CARRP (Chaperone protein dnaK OS=Carsonella ruddii (strain PV) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDTERLI-GDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS VG+T+  R+I G  AK Q   NP NT++  KRLIGR+F D  VQ D+K+ P+K+I+       + V    ++K+ A  +IS+ +L KM+  AE +L   +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   26 VIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAIKRLIGRKFKDDIVQKDIKMVPYKIISSENGDAWVEV----KDKKLAPPQISAEILKKMKITAENFLNEKVTKAVITVPAYFNDSQRQATKDAGKIAGLEV 165          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_TREDE (Chaperone protein dnaK OS=Treponema denticola GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS VGFT   ER++G  AKNQ+  NP  TV+  KR IG R+S+ +   ++K  P+K++    D     V    + K ++ +EIS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIPNSEGGRTTPSIVGFTSKDERVVGQPAKNQMITNPERTVYSVKRFIGHRYSELT--DELKRVPYKIVPQGED-----VRIDIDGKLYSTQEISAFILQKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLEV 162          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 70/144 (48.61%), Postives = 92/144 (63.89%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 70/144 (48.61%), Postives = 92/144 (63.89%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC875687 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 70/144 (48.61%), Postives = 92/144 (63.89%), Query Frame = 3
Query:    3 IIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 431
            +I N +G RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   26 VIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC875687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RICRS4.102e-3145.45Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO4.102e-3145.45Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICCN4.102e-3145.45Chaperone protein dnaK OS=Rickettsia conorii GN=dn... [more]
DNAK_RICAE4.102e-3145.45Chaperone protein dnaK OS=Rickettsia africae (stra... [more]
DNAK_CHLPD4.102e-3147.92Chaperone protein dnaK OS=Chlorobium phaeobacteroi... [more]
DNAK_CARRP4.102e-3150.00Chaperone protein dnaK OS=Carsonella ruddii (strai... [more]
DNAK_TREDE5.357e-3149.31Chaperone protein dnaK OS=Treponema denticola GN=d... [more]
DNAK_RHOS75.357e-3148.61Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT5.357e-3148.61Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA5.357e-3148.61Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]

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Properties
Property NameValue
Genbank descriptionC31401G01EF CTVClemen1 Citrus clementina cDNA clone C31401G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875687 ID=FC875687; Name=FC875687; organism=Citrus clementina; type=EST; length=433bp
AGATTATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGG
TTCACCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGC
CATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGA
GATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAG
GTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGG
CGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCA
AGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCA
GTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAA
GGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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