FC875695

Overview
NameFC875695
Unique NameFC875695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7316 contig Ccv1_Contig7316:732..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875695 vs. ExPASy Swiss-Prot
Match: PLDP1_ARATH (Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 56/177 (31.64%), Postives = 86/177 (48.59%), Query Frame = 1
Query:    4 GFPESG--SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYPRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHG-----FRMSLWYEHLGMLD---DTFLQPESSECVKKV 504
            G  +SG  SV+AI+ WQ RT+   +  ++  L    I     +Y++F+  G R   +  E  P    +               +YVH+K+MIVDD   +IGSANIN RS+ G+RD+EI +       + +R+  +    G      R+SLW EHLG+     D  + P S    K++
Sbjct:  829 GIDDSGAASVRAIMHWQYRTIYRGHNSILTNLY-NTIGVKAHDYISFY--GLRAYGKLSEDGPVATSQ---------------VYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVLIEDTELVDSRMAGKPWKAGKFSSSLRLSLWSEHLGLRTGEIDQIIDPVSDSTYKEI 987          
BLAST of FC875695 vs. ExPASy Swiss-Prot
Match: YA2G_SCHPO (Uncharacterized protein C2F7.16c OS=Schizosaccharomyces pombe GN=SPAC2F7.16c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 55/161 (34.16%), Postives = 75/161 (46.58%), Query Frame = 1
Query:   13 ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYPRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQ-----IHGFRMSLWYEHLGMLDDTFLQPE 480
            E GS++ I++ Q R++      +   L AKGI  D   YL F+  G R     GE                 E    MIYVHAK++I DD   +IGSANIN+RS+ G RD+EIA        + +++  +        H  R  L  EHLG+  D   Q E
Sbjct:  884 EGGSLRLIVECQYRSICHGEHSIFGRLNAKGI--DGSKYLRFY--GLRGWAHLGENH---------------ELVTEMIYVHAKILIADDRVAVIGSANINERSLLGNRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGLETDVLEQRE 1025          
The following BLAST results are available for this feature:
BLAST of FC875695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PLDP1_ARATH7.448e-1231.64Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP... [more]
YA2G_SCHPO8.235e-1134.16Uncharacterized protein C2F7.16c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC31401G09EF CTVClemen1 Citrus clementina cDNA clone C31401G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875695 ID=FC875695; Name=FC875695; organism=Citrus clementina; type=EST; length=691bp
GAGGGGTTTCCAGAGTCTGGTTCAGTTCAGGCAATATTAGATTGGCAGAG
AAGGACAATGGATATGATGTATAAGGATGTTGTTCAGGCTCTTAGAGCAA
AGGGCATTATGGAAGATCCCAGGAACTATTTGACATTCTTCTGCCTTGGG
AATCGGGAGGTGAAGAGGAGTGGTGAATATGAACCTGCAGAAAGGCCGGA
GGATGATTCAGACTATCCTAGAGCTCAGGAAGCTCGACGCTTCATGATCT
ACGTTCATGCCAAGATGATGATTGTTGATGACGAATACATTATAATTGGA
TCTGCCAACATCAACCAGCGATCAATGGAGGGTGCCAGGGACACTGAGAT
AGCCATGGGAGGCTACCAACCATATCATTTGTCAACCAGGGTGCCAGCAC
GAGGCCAGATACACGGCTTCCGTATGTCACTATGGTACGAGCACCTAGGC
ATGCTCGATGACACCTTCCTCCAGCCAGAAAGTAGCGAATGTGTTAAGAA
GGTTAACCAGATTGCCGAACGGTATTGGGACCTGTACTCCAGTGAGTCTC
TTGAGCATGACTTGCCCGGTCACTTGCTCCGCTACCCCATTGGTGTTTCT
GGTGAAGGAGATGTCACGGAGTTGCCAGGAACCGAGTTCTTCCCCGACAC
CAAGGCTCGTGTTCTCGGTACCAATCGGATTATATGCCCCC
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