FC875698

Overview
NameFC875698
Unique NameFC875698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14173 contig Ccv1_Contig14173:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 71/168 (42.26%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  189 YVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLS-----VYFMSRPRSVYLVDFACYRPPDDLKVTREQFIEVAGKWSKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHGRLEASMVMFGALDELFE 677
            YVKLGYHYLI H   L  +P++ ++F   V  LS   L  +L+ ++        GF  +F  TL+     V+FMSRPRS+YL+D++CY PP   KV+ ++F+  +       E SL+FQR+I+  SG+G+ETY+P  + S      TM   R EA  V+FGALD LFE
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFM-NVSLLSLNHL--QLYYNST-------GF--IFVITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPPR-PTMAAAREEAEQVIFGALDNLFE 169          
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 54/170 (31.76%), Postives = 95/170 (55.88%), Query Frame = 3
Query:  183 LKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLKVTRE------QFIEVAGKWSKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHGRLEASMVMFGALDELF 674
            +K VK+ ++YL+ H   L  +P L++  + E   LS ++L +  +   +++  S+  FF   A   ++Y M+RP+ VYLVDF+CY PP  LK + +      + +  AG W +  +  +DF  +I++ SG+G ETY+P+ + +       +   R+E   V+ GA+D LF
Sbjct:    5 MKKVKIFFNYLMAHRFKLCFLP-LMVAIAVEASRLSTQDL-QNFYLYLQNNHTSLTMFFLYLALGSTLYLMTRPKPVYLVDFSCYLPPSHLKASTQRIMQHVRLVREAGAWKQESDYLMDFCEKILERSGLGQETYVPEGLQTLPLQ-QNLAVSRIETEEVIIGAVDNLF 171          
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  168 LQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLKVTREQFIEVAGKWSKS----------DEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHGRLEASMVMFGALDELFE 677
            + SVN   VKL Y Y++ +   L   P L    + +   L+  +L   L    +H+L +V   F    F L +Y ++RP  VYLVD++CY PP  LKV+  + +++  +  K+          D +SLDF R+I + SG+GDETY P+ ++       T    R E   V+ GAL+ LFE
Sbjct:    1 MTSVN---VKLLYRYVLTNFFNLCLFP-LTAFLAGKASRLTINDLHNFL-SYLQHNLITVTLLFAFTVFGLVLYIVTRPNPVYLVDYSCYLPPPHLKVSVSKVMDIFYQIRKADTSSRNVACDDPSSLDFLRKIQERSGLGDETYSPEGLIHVPPR-KTFAASREETEKVIIGALENLFE 174          
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  228 IYLATIPVLLLVFSAEVGS-LSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLKVTREQFI-------EVAGKW-SKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHG----RLEASMVMFGALDELF 674
            ++   + + L+   A  GS ++ E+L +     T+++L ++     +  F   +Y ++RP+ VYLVDF+CY PP  LKV+ +  +       E    W +K  +  +DFQ +I++ SG+G ETYIP+ +      C  ++ G    R E   V+FGALD LF
Sbjct:    7 VFFKILFISLMAGLAMKGSKINVEDLQKFSLHHTQNNLQTISLLLFLVVFVWILYMLTRPKPVYLVDFSCYLPPSHLKVSIQTLMGHARRAREAGMCWKNKESDHLVDFQEKILERSGLGQETYIPEGL-----QCFPLQQGMGASRKETEEVIFGALDNLF 163          
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 36/98 (36.73%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  387 YFMSRPRSVYLVDFACYRPPDDLKVTREQFIEVAGKWSKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHGRLEASMVMFGALDELFER 680
            Y  +R + VYLVDF+C++P D  K++ E F  +A       E ++ F  RI+  SG+GD+TY P+ ++++     +M   R E+ +V+FGAL+ LF++
Sbjct:   52 YSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPT-PSMYEARHESELVIFGALNSLFKK 148          
BLAST of FC875698 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  387 YFMSRPRSVYLVDFACYRPPDDLKVTREQFIEVAGKWSKSDEASLDFQRRIMKSSGIGDETYIPKVVMSAEENCMTMKHGRLEASMVMFGALDELFER 680
            Y  +R + VYLVDF+C++P D  K++ E F  +A       + ++ F  RI+  SG+GD+TY P+ ++++     +M   R E+ +V+FGAL+ LF++
Sbjct:   52 YSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTDETIQFMTRILNRSGLGDDTYSPRCMLTSPPT-PSMYEARHESELVIFGALNSLFKK 148          
The following BLAST results are available for this feature:
BLAST of FC875698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KCS2_ARATH2.637e-2542.26Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS16_ARATH9.705e-2031.763-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS18_ARATH5.888e-1733.893-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS8_ARATH1.228e-1432.103-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]
KCS14_ARATH3.024e-1336.73Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS13_ARATH6.737e-1335.713-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC31401G12EF CTVClemen1 Citrus clementina cDNA clone C31401G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875698 ID=FC875698; Name=FC875698; organism=Citrus clementina; type=EST; length=692bp
GATTCTTATCAAACTAGATAGCTATAACACATAACATTAACGTCATGGCT
AGAAGTGAACGAGACCTCCTGTCAACTGAAATTGTCAACCGTGGGATCGA
GTCCTCCGGTCCCAATGCCGGTTCTTTGACGTTCTCTGTGAGAGTCCGGA
GACGGCTGCCAGATTTTCTCCAGTCCGTGAACCTCAAGTACGTGAAGCTA
GGGTACCATTACCTCATCAACCATGCCATATATTTGGCCACCATTCCTGT
GTTGTTACTTGTGTTTAGTGCTGAAGTGGGGAGTCTCAGTAGAGAAGAGC
TCTGGGAGAAGCTCTGGGAAGATACCCGCCACGATCTCGCCTCCGTTCTT
GGCTTCTTCGGCGTGTTCGCCTTCACGCTCTCCGTTTACTTCATGTCACG
CCCTCGCTCCGTTTATCTCGTTGATTTTGCTTGCTATCGCCCCCCCGATG
ATCTCAAGGTGACGAGAGAGCAGTTCATCGAAGTGGCGGGAAAATGGAGC
AAGTCCGACGAGGCGAGCTTGGATTTTCAAAGGAGAATAATGAAATCATC
GGGGATTGGAGATGAAACGTACATCCCCAAGGTAGTGATGTCTGCTGAGG
AGAACTGCATGACGATGAAACACGGTCGTTTAGAAGCTTCGATGGTGATG
TTTGGAGCTCTGGACGAGCTATTCGAAAGACTAANGTGAGGC
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