FC875702

Overview
NameFC875702
Unique NameFC875702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.944e-45
Identity = 98/200 (49.00%), Postives = 121/200 (60.50%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ---PPSH 667
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   R RE+AAF  QT  ETTGGW  AP G ++WGYCF  E +PPS YC  +  +PC    KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q   P SH
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSH 256          

HSP 2 Score: 23.0978 bits (48), Expect = 2.944e-45
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPS H+VIT  W
Sbjct:  252 KPSSHDVITGRW 263          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.946e-45
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:  164 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCN-LNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ---PPSH 667
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  + +E+AAF AQT  ETTGGW  AP G YAWGYCF+SE +    YC+  ++PC    KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q   P SH
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSH 246          

HSP 2 Score: 24.6386 bits (52), Expect = 2.946e-45
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  655 ATKPSCHEVITDEW 696
            A KPS H+VIT  W
Sbjct:  240 ANKPSSHDVITGRW 253          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.946e-45
Identity = 93/186 (50.00%), Postives = 112/186 (60.22%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T R REIAAF AQT  ETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSP 231          

HSP 2 Score: 26.9498 bits (58), Expect = 2.946e-45
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VIT  W
Sbjct:  232 KPSCHDVITGRW 243          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.194e-44
Identity = 92/174 (52.87%), Postives = 110/174 (63.22%), Query Frame = 2
Query:  170 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 673
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R RE+AAF AQT  ETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHA 248          

HSP 2 Score: 23.8682 bits (50), Expect = 3.194e-44
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  655 ATKPSCHEVITDEW 696
            A KPS H VIT +W
Sbjct:  241 APKPSSHAVITGQW 254          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 174.096 bits (440), Expect = 1.200e-43
Identity = 98/205 (47.80%), Postives = 119/205 (58.05%), Query Frame = 2
Query:  119 CGSGVVCGE----RDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 673
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    R RE+AAF AQT  ETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHA 245          

HSP 2 Score: 23.8682 bits (50), Expect = 1.200e-43
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  655 ATKPSCHEVITDEW 696
            A KPS H VIT +W
Sbjct:  238 APKPSSHAVITGQW 251          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.663e-43
Identity = 89/177 (50.28%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHHA 673
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R R++AAF AQT  ETTGGW  AP G +AWGYCF  E    + YC  +  +PC    +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ   PS HA
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHA 193          

HSP 2 Score: 23.483 bits (49), Expect = 2.663e-43
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  655 ATKPSCHEVITDEW 696
            A KPS H VIT +W
Sbjct:  186 APKPSSHAVITGKW 199          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 90/177 (50.85%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQP--PSHHA 673
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   + RE+AAF AQT  ETTGGW  AP G +AWGYCF  E    S YC  +  +PC    +YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQP  PS HA
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHA 193          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.877e-42
Identity = 89/197 (45.18%), Postives = 113/197 (57.36%), Query Frame = 2
Query:  119 CGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEI--SPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   R RE+AAF AQT  ETTGGW  AP G Y+WGYCF  E   +  S YC  +  +PC    KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q P
Sbjct:   51 CGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSP 243          

HSP 2 Score: 25.409 bits (54), Expect = 2.877e-42
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH V+T +W
Sbjct:  244 KPSCHAVMTGQW 255          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.400e-41
Identity = 82/169 (48.52%), Postives = 104/169 (61.54%), Query Frame = 2
Query:  179 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPSHHA 673
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT  ETTGGW  AP G Y+WGYC+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ P   A
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSA 171          

HSP 2 Score: 23.483 bits (49), Expect = 2.400e-41
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPS H+VIT  W
Sbjct:  168 KPSAHDVITGRW 179          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.289e-41
Identity = 87/187 (46.52%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT  ETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q P
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSP 239          

HSP 2 Score: 26.5646 bits (57), Expect = 5.289e-41
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VIT +W
Sbjct:  240 KPSCHAVITGQW 251          
The following BLAST results are available for this feature:
BLAST of FC875702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_ORYSJ2.944e-4549.00Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA2.946e-4550.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_SOLTU2.946e-4550.00Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SECCE3.194e-4452.87Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU1.200e-4347.8026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE2.663e-4350.28Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU2.828e-4350.8526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ2.877e-4245.18Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC2.400e-4148.52Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ5.289e-4146.52Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31401H04EF CTVClemen1 Citrus clementina cDNA clone C31401H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875702 ID=FC875702; Name=FC875702; organism=Citrus clementina; type=EST; length=696bp
GATACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGA
GGCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTA
GGAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGA
TACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGG
AGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCC
AGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTG
CCTTTTTTGCCCAAACTGGCCGTGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
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