FC875702

Overview
NameFC875702
Unique NameFC875702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.307e-41
Identity = 81/161 (50.31%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  179 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT  ETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++F++AIWFWMTAQ P
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSP 174          

HSP 2 Score: 28.4906 bits (62), Expect = 5.307e-41
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VIT++W
Sbjct:  175 KPSCHDVITNQW 186          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.525e-40
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = 2
Query:  194 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM----TAQPPSH 667
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT +ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM    T  P  H
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCH 231          

HSP 2 Score: 28.1054 bits (61), Expect = 1.525e-40
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  664 PSCHEVITDEW 696
            PSCHEVIT EW
Sbjct:  228 PSCHEVITGEW 238          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.191e-39
Identity = 81/174 (46.55%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT  ETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q P
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSP 246          

HSP 2 Score: 24.6386 bits (52), Expect = 6.191e-39
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH V T +W
Sbjct:  247 KPSCHAVATGQW 258          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.374e-38
Identity = 81/172 (47.09%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT  ET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q   PS H
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCH 177          

HSP 2 Score: 24.6386 bits (52), Expect = 1.374e-38
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VI  +W
Sbjct:  173 KPSCHNVIIGQW 184          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.374e-38
Identity = 81/172 (47.09%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT  ET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ   PS H
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCH 177          

HSP 2 Score: 24.6386 bits (52), Expect = 1.374e-38
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VI  +W
Sbjct:  173 KPSCHNVIIGQW 184          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.087e-36
Identity = 75/179 (41.90%), Postives = 103/179 (57.54%), Query Frame = 2
Query:  155 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ   ETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +   PS H
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCH 217          

HSP 2 Score: 24.2534 bits (51), Expect = 2.087e-36
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  658 TKPSCHEVITDEW 696
            TKPSCH+V+  E+
Sbjct:  212 TKPSCHQVMVGEY 224          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.022e-35
Identity = 80/172 (46.51%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT  ETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ   PS H
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCH 171          

HSP 2 Score: 27.7202 bits (60), Expect = 1.022e-35
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VIT +W
Sbjct:  167 KPSCHDVITGQW 178          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.436e-34
Identity = 85/191 (44.50%), Postives = 106/191 (55.50%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT  ETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ   PS H
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCH 186          

HSP 2 Score: 24.6386 bits (52), Expect = 1.436e-34
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VI   W
Sbjct:  182 KPSCHDVILGRW 193          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.135e-34
Identity = 80/172 (46.51%), Postives = 96/172 (55.81%), Query Frame = 2
Query:  161 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 670
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT  ETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q   PS H
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCH 178          

HSP 2 Score: 26.9498 bits (58), Expect = 4.135e-34
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VIT  W
Sbjct:  174 KPSCHDVITGRW 185          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 2.012e-33
Identity = 76/180 (42.22%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  122 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT  ET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q P
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSP 213          

HSP 2 Score: 26.9498 bits (58), Expect = 2.012e-33
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VIT+ W
Sbjct:  214 KPSCHAVITESW 225          
The following BLAST results are available for this feature:
BLAST of FC875702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ5.307e-4150.31Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.525e-4045.78Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI12_ORYSJ6.191e-3946.55Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.374e-3847.09Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.374e-3847.09Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI10_ORYSJ2.087e-3641.90Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.022e-3546.51Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ1.436e-3444.50Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY4.135e-3446.51Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR2.012e-3342.22Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC31401H04EF CTVClemen1 Citrus clementina cDNA clone C31401H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875702 ID=FC875702; Name=FC875702; organism=Citrus clementina; type=EST; length=696bp
GATACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGA
GGCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTA
GGAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGA
TACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGG
AGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCC
AGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTG
CCTTTTTTGCCCAAACTGGCCGTGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
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