FC875704

Overview
NameFC875704
Unique NameFC875704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_THEM4 (Chaperone protein dnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY+IL V  +AT+EEIR  Y +L  KWHPD+  +++  A  +F+EI EAY+VLSDP KR  YD  G
Sbjct:    4 KDYYEILGVSRNATQEEIRQAYKKLIKKWHPDRNYENKKLAEEKFKEIQEAYEVLSDPEKRAMYDKFG 71          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_SALRD (Chaperone protein dnaJ OS=Salinibacter ruber (strain DSM 13855) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  174 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            P+DYY IL VD DA+++EI+  Y + A+++HPD+  D   A  +F+E +EAY+VLSDP KR+ YD  G
Sbjct:    2 PRDYYDILGVDEDASDKEIKKAYRKKAMEYHPDRNPDDPEAEQKFKEASEAYEVLSDPEKRQRYDQFG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBB (Chaperone protein dnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY++L +   A+++EI+  + +LA+K+HPDK K    A  +F+EINEAYQVLSDP K+  YD  G
Sbjct:    4 KDYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBA (Chaperone protein dnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY++L +   A+++EI+  + +LA+K+HPDK K    A  +F+EINEAYQVLSDP K+  YD  G
Sbjct:    4 KDYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  180 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            DYY++LEVD +A+ EEI+  Y +LALK+HPD+  D   A  +F+ INEAYQVLSD  KR  YD  G
Sbjct:    5 DYYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNPEAEEKFKLINEAYQVLSDEEKRALYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_PROVI (Chaperone protein dnaJ OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY+IL V   A ++EI+  Y +LALK+HPDK  D   A   F+E+NEAY+VLS+  KRR YD  G
Sbjct:    3 KDYYEILGVGRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQFG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_METSS (Chaperone protein dnaJ OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY++L V+ DA++EEI+ +Y +LA+K+HPD+  D   A   F+E  EAY+VLSD  KR  YD  G
Sbjct:    4 KDYYEVLGVNRDASDEEIKKSYRKLAMKYHPDRNPDNPKAEESFKEAKEAYEVLSDEQKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_OCEIH (Chaperone protein dnaJ OS=Oceanobacillus iheyensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL +D  A+++EI+ NY +LA K+HPD  K+ D A  +F+E+ EAY+VLSD  KR +YD  G
Sbjct:    4 RDYYEILGIDKSASQDEIKKNYRKLARKYHPDVNKEAD-AAEKFKEVKEAYEVLSDDQKRAQYDQFG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_METFK (Chaperone protein dnaJ OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY++L V+ DAT+EEI+  Y +LA+K+HPD+  D   A   F+E  EAY+VLSD  KR  YD  G
Sbjct:    4 RDYYEVLGVNRDATDEEIKKAYRKLAMKYHPDRNPDNPKAEEHFKEAKEAYEVLSDDQKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD 395
            KDYY+IL V  +AT++EI+  Y RL  ++HPD  KD   A  +F+EINEAY+VLSDP KR +YD  G  H+ D
Sbjct:    5 KDYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKD-PSAHEKFKEINEAYEVLSDPQKRAQYDQFG--HVGD 74          
The following BLAST results are available for this feature:
BLAST of FC875704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
DNAJ_THEM43.050e-1354.41Chaperone protein dnaJ OS=Thermosipho melanesiensi... [more]
DNAJ_SALRD3.050e-1350.00Chaperone protein dnaJ OS=Salinibacter ruber (stra... [more]
DNAJ_CLOBB3.050e-1350.75Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ_CLOBA3.050e-1350.75Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ_NITSB3.983e-1356.06Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_PROVI5.202e-1353.73Chaperone protein dnaJ OS=Prosthecochloris vibriof... [more]
DNAJ_METSS5.202e-1350.75Chaperone protein dnaJ OS=Methylovorus sp. (strain... [more]
DNAJ_OCEIH6.794e-1350.75Chaperone protein dnaJ OS=Oceanobacillus iheyensis... [more]
DNAJ_METFK6.794e-1350.75Chaperone protein dnaJ OS=Methylobacillus flagella... [more]
DNAJ_DICT66.794e-1353.42Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionC31401H06EF CTVClemen1 Citrus clementina cDNA clone C31401H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875704 ID=FC875704; Name=FC875704; organism=Citrus clementina; type=EST; length=696bp
GAAGCGCTTAAGCCTTTGTAACTAGTTTTGAGCTCTATTGTCTGTCTCGT
GTTTGTGTCCCCTCTACTACAGAGGTCATGATGTGGGACGAATGGGTCGA
TTGCAACAATAACGATGAACAAACACAACAGGATTCCCATATCAATTTTG
ATTTTCTTTCTCTTCTCGCCAAACCCAAGGATTATTATAAAATATTGGAA
GTTGATTACGATGCCACGGAGGAAGAAATTAGGTCCAATTACATTCGTCT
AGCGCTGAAATGGCACCCAGATAAGCAAAAGGATCGAGATTGTGCAACTT
CGAGATTTCAAGAGATAAACGAGGCTTACCAGGTTTTGAGCGATCCTGTC
AAAAGGAGAGAATATGACAGCAAAGGGATGTTGCACATATATGATCGCAA
CATAATTGAGTATCTTAATCGCTACAAGGGCTTAATATTAACTTGCAATG
GTCTTGGGATGAGGCATTCAATTGTGTAATATGTTGTCAGCACAGTTGGG
GCAGTTCATATTGGGAGGCATAGAATTACCAATGCTGCAAATAGCATTGA
GGGCATGGAGAATAGCAGTTAATATGTATTGCGATAACTTGAATGCCCTT
GTATAATAGAAACCAATGCTAAAACATCGTTGTGTAACAGCTAATGCCTG
CCAATTTGGGGTTACATTGTCCAAAAAAAAAAAAAAAAAAAAAAAA
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