FC875707

Overview
NameFC875707
Unique NameFC875707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:20..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.744e-59
Identity = 108/172 (62.79%), Postives = 132/172 (76.74%), Query Frame = 2
Query:  167 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            + C A S   D VPDMGKR+LMNLLLLGA++ P      P+ +F  PP  G  AG G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G V F PWTE
Sbjct:   59 VSCSAAS---DDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTE 227          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = 2
Query:  122 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            PA+   + ++ +   ++  A S     VPDM KR +MNL+L G   LP   + + Y  FF PP  G  GGG  AKDA+GNDI A +WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  WTE
Sbjct:   12 PAKASAIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTE 194          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.033e-58
Identity = 107/186 (57.53%), Postives = 131/186 (70.43%), Query Frame = 2
Query:  122 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  W+E
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSE 194          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.962e-58
Identity = 101/158 (63.92%), Postives = 122/158 (77.22%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VP MG+RQ MNLL  G V+      L P   +F PP  G +GGG TAKDA+GNDII +++L  H  G+RTL +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF  W E
Sbjct:   10 VPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.153e-57
Identity = 110/172 (63.95%), Postives = 127/172 (73.84%), Query Frame = 2
Query:  167 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            I C A S   D VPDMGKR+LMNLLLLGA++ PT     P+ +F  PP  G  AG G  AKDA GNDI    WL T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G V F PWTE
Sbjct:   61 ISCSAAS---DEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTE 229          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G+ +     ML P   +F PP  G  GGG  AKDA+GNDI  +D+L  H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDFLAKHPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 101/158 (63.92%), Postives = 118/158 (74.68%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V  PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 101/159 (63.52%), Postives = 123/159 (77.36%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            VPD+G+RQ +NLL +G  +      L P   +F PP  G AGGG  AKDA+GNDII +D+L TH  GDR+L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA + E+ K+ F  WTE
Sbjct:   10 VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTE 168          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 100/158 (63.29%), Postives = 117/158 (74.05%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V   WTE
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 97/158 (61.39%), Postives = 114/158 (72.15%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+    +L     GDR L +GLKGDPTY+VV+  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH N+ + K+V  PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVTKFLENRNAGDRNLVQGLKGDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNVSDDKIVLTPWTE 167          
The following BLAST results are available for this feature:
BLAST of FC875707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_CYAPA2.744e-5962.79Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRIA_CHLRE2.323e-5856.99Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_VOLCA3.033e-5857.53Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_TRIEI3.962e-5863.92Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRIB_CYAPA1.153e-5763.95Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_CYAP43.354e-5763.29Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRIA_ANAVT3.354e-5763.92Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNP29.758e-5763.52Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_ANASP2.839e-5663.29Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_NOSP71.840e-5561.39Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]

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Properties
Property NameValue
Genbank descriptionC31401H09EF CTVClemen1 Citrus clementina cDNA clone C31401H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875707 ID=FC875707; Name=FC875707; organism=Citrus clementina; type=EST; length=687bp
GGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTCTCCT
CAGCAACTCCTTCTCAGCTATGCTCAAGCAAGAGTGGTATGTTCTGTCCA
TCGAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAAGAA
TCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTGATA
GAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTTGGGT
GCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTTCTT
TGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATG
CCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCT
GGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGT
TGTGGAAAAAGACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCA
CTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATC
TGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGG
GCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTA
AGGTAGTCTTCGTTCCATGGACGGAACAGATTTCAGA
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