FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_KLEP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Klebsiella pneumoniae (strain 342) GN=metE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ E+L  V  +LR+  W+Q  +AG+  +P   F++YD VL T+ +LG VP R+    G I  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNATREELLTVGRELRARHWEQQKQAGVDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSIDIDTLFRIGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ERWCT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Erwinia carotovora subsp. atroseptica GN=metE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            + +H +G+PR+G +RELK A ES+W G ++ E+L  V  +LR+  W+Q  +AG+  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    3 IVNHTLGFPRVGLRRELKKAQESYWAGNATQEELLTVGRELRARHWQQQKDAGVDLLPVGDFAWYDHVLTTSLLLGNVPARHQNEDGSVDLDTLFRIGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN---WNGGEIGFDVYFSMARG 342
            M +H +GYPR+G  RELK A E +W G  + + LQ V+  +R++ W    +AG+  IP N FS+YDQVLD + MLG +P R++           D+YF+MARG
Sbjct:    1 MIAHNLGYPRIGDNRELKKACEQYWSGAITQQKLQDVAKAIRTNNWLTQKDAGLDLIPCNDFSFYDQVLDMSFMLGLIPERFSSLLQKKDLTELDIYFAMARG 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CITK8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ EDL     +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VP R+  + G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNATREDLLATGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNSDGSVDIDTLFRIGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARGNASVPA 360
            +++VG+PR+G +RELK  LE +WD K+S  ++ +++ +LR   W    EAGI +I SN FS YD +LDT  ML AVP R+ N +  +   ++YF+MARG  +  A
Sbjct:    7 TYVVGFPRIGEQRELKKVLERYWDQKTSFSEIDEIAKNLRRRHWLYQKEAGISFISSNDFSLYDNMLDTAIMLNAVPERFSNIHDKQ---ELYFAMARGTNNTVA 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BUCAI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +H +G+PR+G  RELK A E +W G+   +DL  V ++LR   W++  E+GI YIP   F++YD VL T+ MLG +P R+N     I  D  F +ARG
Sbjct:    5 NHTLGFPRIGLNRELKKAQEQYWSGELMIKDLLLVGSELRKKNWQKQKESGIDYIPVGDFAWYDHVLTTSMMLGNIPERHNNTVDSIDLDCLFRIARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BORPE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella pertussis GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNW-NGGEIGFDVYFSMARGNA 348
            H +G+PR+G +RELK A+E++W G+ +AE L +    LR++ W++ ++AG+ ++P   F++YD +L+ T +LGAVP R+    G  +  D  F M RG A
Sbjct:    5 HNLGFPRIGAQRELKRAVEAYWAGRQTAEALHETGRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVPARFGHPEGKPVDLDTLFRMGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BORPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella parapertussis GN=metE PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNW-NGGEIGFDVYFSMARGNA 348
            H +G+PR+G +RELK A+E++W G+ +AE L +    LR++ W++ ++AG+ ++P   F++YD +L+ T +LGAVP R+    G  +  D  F M RG A
Sbjct:    5 HNLGFPRIGAQRELKRAVEAYWAGRQTAEALHETGRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVPARFGHPEGKPVDLDTLFRMGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BORBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella bronchiseptica GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNW-NGGEIGFDVYFSMARGNA 348
            H +G+PR+G +RELK A+E++W G+ +AE L +    LR++ W++ ++AG+ ++P   F++YD +L+ T +LGAVP R+    G  +  D  F M RG A
Sbjct:    5 HNLGFPRIGAQRELKRAVEAYWAGRQTAEALHETGRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVPARFGHPEGKPVDLDTLFRMGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALNS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella newport (strain SL254) GN=metE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG V  R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNSTREALLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVSARHQNNDGSVDIDTLFRIGRGRA 104          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_KLEP37.476e-1942.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ERWCT7.476e-1940.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH37.476e-1943.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CITK89.764e-1942.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM1.275e-1843.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAI1.275e-1843.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPE1.275e-1840.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPA1.275e-1840.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORBR1.275e-1840.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALNS1.666e-1843.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
back to top