FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY------NWNGGEIGFDVYFSMARG 342
            ++S  +G+PRMG  RELK  +E++W GK      QK   ++R + WK   EAGI+ IPSN FS YDQVLD   + GA+P RY          G  G   YF+M RG
Sbjct:    2 VSSSNLGFPRMGENRELKKLVENYWQGKVEETQFQKELKEIRINHWKLQKEAGIEIIPSNDFSLYDQVLDHIHLFGAIPKRYTPVVESEIEDGSNGLRTYFAMGRG 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BUCCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Cinara cedri GN=metE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            +HI+G+PR+G  RELKFALE +W  K++ E+L  +  ++R   WK   ++G+ Y+    F++YD VL+ + M+  +P R+N N   +  D  F +ARG+  V
Sbjct:    5 NHILGFPRIGLNRELKFALEKYWSKKNTLEELLLIGKNIRKENWKNQIDSGMDYVTVGDFAWYDHVLNISMMINNIPERHNPNNHILNIDTLFKVARGSKGV 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_VIBFM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio fischeri (strain MJ11) GN=metE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   31 SVCKMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            S  K  +HI+GYPR+G +RELKFA E +W G+   ++L  V ++LR   WK  S +G+ ++ +  F++YD VL T+ +LG VP R+  N G    D  F + RG +
Sbjct:    5 SKTKTVTHILGYPRVGAQRELKFAQEKYWRGEIEQKELLAVGSELRQRHWKDQSASGLDFVTAGDFAWYDHVLTTSLLLGHVPARH--NNGFPDLDTLFKVGRGQS 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_VIBF1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=metE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   31 SVCKMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            S  K  +HI+GYPR+G +RELKFA E +W G+   ++L  V ++LR   WK  S +G+ ++ +  F++YD VL T+ +LG VP R+  N G    D  F + RG +
Sbjct:    5 SKTKTVTHILGYPRVGAQRELKFAQEKYWRGEIEQKELLAVGSELRQRHWKDQSASGLDFVTAGDFAWYDHVLTTSLLLGHVPARH--NNGFPDLDTLFKVGRGQS 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SHEON (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shewanella oneidensis GN=metE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            M  + +G+PR+G +RELKFALE +W G+S+  +L +V+ +LR + W+    AGI+ +P   F++YDQVL  +A L A+P R+   G  I  D  F +ARG A
Sbjct:    1 MQLNSLGFPRIGRRRELKFALEKYWRGESTQAELHEVARELRRTHWQWQVAAGIEQVPVGDFAFYDQVLTLSATLNAIPDRHRGEGA-IDLDTLFRVARGRA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            S ++G+PR+G +RELK   E++W GK++ E+L     +LR   WK   +AG+  IPSN FSYYDQVLD + +  A+P RY         DV F+M RG
Sbjct:    4 SSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPERYT-KFDLAPIDVLFAMGRG 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PARL1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=metE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFW-DGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +GYPR+GP RELK ALE++W DG+ +   L   +  LR + W+   E GI +IPSN F+ YD VLDT  M GAVP R+   G EI    YF+MARG
Sbjct:    7 LGYPRVGPHRELKAALETYWRDGEEAP--LLDTAKSLRRASWRLQKEHGIGHIPSNDFTLYDHVLDTICMTGAVPERFA-AGAEIDLATYFAMARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BUCAP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARG 342
            +H +G+PR+G  RELK A E +W G    ED   V + LR   WK+  +AGI YIP   F++YD VL T+ MLG +P R+ N N  +I  D  F +ARG
Sbjct:    5 NHTLGFPRIGLNRELKKAQEDYWSGNLLYEDFLCVGSQLRRENWKKQKDAGIDYIPVGDFAWYDHVLSTSMMLGNIPERHLNVNDNKIDLDCLFRIARG 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BAUCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            SHI+G+PR+G  RELK A ES+WDG  + + L     +LR+  W+Q  +AG+  +P   F++YD VL T+ ML  VP R+  + G    D  + + RGNA
Sbjct:    5 SHILGFPRIGLHRELKRAQESYWDGHITQQQLLNTGRELRACHWQQQKQAGLNMLPVGDFAWYDHVLTTSLMLDNVPVRHRNDDGSSNIDTLYRIGRGNA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PASMU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pasteurella multocida GN=metE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            H+ G+PR+G KRELKFA E +W G+ + +DL +++  LR   WK  + A   ++    F++YD +LD     GA+P R+ ++   +  + YF +ARGN
Sbjct:    5 HVAGFPRVGAKRELKFAQERYWRGEIAEQDLLEIAQKLREINWKHQAAANADFVAVADFTFYDHILDLQVATGAIPARFGFDSQNLSLNEYFQLARGN 102          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_DICDI1.666e-1844.345-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCCC1.666e-1838.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBFM2.175e-1840.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBF12.175e-1840.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHEON2.175e-1843.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL2.175e-1844.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PARL12.841e-1851.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAP2.841e-1845.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BAUCH2.841e-1842.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PASMU3.710e-1837.765-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
back to top