FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.266e-18
Identity = 38/101 (37.62%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGE-IGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A+E++W GK +A++L      LR++ W++ +++G++++P   F++YD +L+ T +LGAVP R+     + +  D  F M RG A
Sbjct:    4 THNLGFPRIGAQRELKRAVEAYWAGKQTADELLATGRALRAAHWRRQADSGLRFVPVGDFAWYDHILEWTTLLGAVPARFAQPETQAVSLDTLFRMGRGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.266e-18
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            + G+PR+G  RELK  +E++W G ++ ++++  + +LR+  WK    AGI  IPSN FSYYDQ+LDT  +L  +P RY     E   +  F+M RG
Sbjct:    7 VSGFPRIGQNRELKKIIEAYWKGNTTLDEVRATAKELRAKHWKLQQAAGIDLIPSNDFSYYDQMLDTAILLNVIPQRYQRLAFENPEETLFAMGRG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_VIBCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio cholerae GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +HI+GYPR+G KRELKFALE +W G+     L++V + +R   W    EAG+ ++ +  F++YD VL TT +LG VP R+  + G    D  F + RG +
Sbjct:    4 THILGYPRIGEKRELKFALEKYWRGEIDQAALKQVGSQIRQKNWALQKEAGLDFVTAGDFAWYDHVLTTTLLLGHVPKRH--SHGFPDLDTLFRVGRGQS 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THEYD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   40 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            K+ + + GYPR+GPKRELK ALE +W+ K S  +L + +  L     K +  +G+  IPSN FS YD +LD + M  AVP R+N     +  D YF+MARG   +PA
Sbjct:    2 KIKTTVFGYPRIGPKRELKKALEDYWNWKISKVELLETANSLIIQNAKVIQSSGVDLIPSNEFSLYDFILDHSVMFNAVPKRFNRISDPL--DRYFAMARGTQELPA 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G  RELK ALE++W G+   + L++V   LR+  W+   +AGI+ +P   F++YDQVL  + M G +P R+    G+   D  F+MARG A
Sbjct:    4 AHNLGFPRIGADRELKKALEAYWKGELDEQGLRQVGRQLRARHWQAQLDAGIELLPVGDFAWYDQVLSHSLMFGVIPQRFRPAEGQATLDTLFAMARGVA 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_HAHCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN-WNGGEIGFDVYFSMARGNAS 351
            + +H +G+PR+G KRELKFA E +W G+ S E+L  V A+LR   W+  S+  +   P   FS+YDQVLD +  LG +P R +   GGE+  D YF +ARG ++
Sbjct:    2 ITTHNLGFPRIGAKRELKFAQEDYWKGRISQEELLNVGAELRQRHWRNQSQ--LDLTPVGDFSFYDQVLDMSFTLGVIPERVSRLQGGEL--DNYFRVARGRSA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_HAES2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus somnus (strain 2336) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            H++G+PR+G KRELKFA E +W  + + +DL  ++  LR   WK  ++A   ++    F++YD +LD     GA+P R+ ++   +  D YF +ARGN
Sbjct:    5 HVLGFPRVGAKRELKFAQERYWRKELAEQDLLDLAKALREKNWKHQADANADFMAVGDFTFYDHILDLQVATGAIPARFGFDSKNLTLDQYFQLARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_AERS4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Aeromonas salmonicida (strain A449) GN=metE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRELKFALES+W G+++  +L      LR   W+    AG+  +P   F++YDQVL T+ ++ AVP R+    G+   D  F +ARG A
Sbjct:    4 AHTLGFPRIGAKRELKFALESYWRGETTQAELIATGKSLRERHWQAQRTAGVNLLPVGDFAWYDQVLGTSLLVDAVPARH--RHGDTDLDTLFRVARGRA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MARAV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR-YNWNGGEIGFDVYFSMARGNAS 351
            +H +G+PR+G +RELKFALE +W G+ + ++L   +ADLR   W+Q  +AG+ Y+P   FS YDQVLD +  LG +P R  +  G E+  D YF  ARG  +
Sbjct:    4 THNLGFPRIGGQRELKFALEDYWGGRQTEQELAITAADLRLRHWQQ--QAGLDYVPVGDFSLYDQVLDMSVTLGNLPIRAASKEGSEL--DAYFRAARGRGA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CAMJR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni (strain RM1221) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M + I+ YPR+G  RELKFA+E ++  +SS E+L K + DLR   W+++ +AGI +IPSN FS YD VLD   +   V  +Y  N      D YF+ +RG
Sbjct:    1 MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIRHWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYK-NLNLDALDEYFAQSRG 99          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_BORA18.266e-1837.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA8.266e-1841.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBCH1.080e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEYD1.080e-1743.935-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU51.080e-1741.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAHCH1.080e-1744.235-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAES21.080e-1737.765-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_AERS41.080e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MARAV1.410e-1745.105-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAMJR1.410e-1744.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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