FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CAMJJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M + I+ YPR+G  RELKFA+E ++  +SS E+L K + DLR   W+++ +AGI +IPSN FS YD VLD   +   V  +Y  N      D YF+ +RG
Sbjct:    1 MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIRHWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYK-NLNLDALDEYFAQSRG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CAMJE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M + I+ YPR+G  RELKFA+E ++  +SS E+L K + DLR   W+++ +AGI +IPSN FS YD VLD   +   V  +Y  N      D YF+ +RG
Sbjct:    1 MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIRHWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYK-NLNLDALDEYFAQSRG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CAMJ8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M + I+ YPR+G  RELKFA+E ++  +SS E+L K + DLR   W+++ +AGI +IPSN FS YD VLD   +   V  +Y  N      D YF+ +RG
Sbjct:    1 MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIRHWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYK-NLNLDALDEYFAQSRG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BUCBP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +H +G+PR+G  RELK A E +W  K S E+L  V   LR   W+Q  E GI YIP   FS+YD VL T+ +LG +P R+      +  D  F +ARG A   A
Sbjct:    4 NHTLGFPRIGLFRELKVAQEKYWSRKISKEELFSVGKTLRVRHWQQQKELGINYIPVGDFSWYDHVLGTSMLLGNIPKRHKNGNDLVTLDTLFRVARGVAPTGA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BIFLO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            + G+PR+G  RELK  +E +W G +    ++  +A+LR+  WK    AGI  IPSN FSYYDQ+LDT  +L  +P RY     +   D  F+MARG
Sbjct:    7 VSGFPRIGQNRELKKIIEGYWKGANDLAAVKATAAELRAKHWKLQQAAGIDLIPSNDFSYYDQMLDTAILLNVIPQRYARLSFDNQEDTLFAMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BIFLD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=metE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            + G+PR+G  RELK  +E +W G +    ++  +A+LR+  WK    AGI  IPSN FSYYDQ+LDT  +L  +P RY     +   D  F+MARG
Sbjct:    7 VSGFPRIGQNRELKKIIEGYWKGANDLAAVKATAAELRAKHWKLQQAAGIDLIPSNDFSYYDQMLDTAILLNVIPQRYARLSFDNQEDTLFAMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_VIBHA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio harveyi GN=metE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +HI+GYPR+G KRELKFA E +W G+    +L++V A LR   W   +EAG+ +  +  F++YD VL TT +LG  P R+    G    D  F + RG +
Sbjct:    5 THILGYPRIGEKRELKFAQEKYWRGEIEQTELKQVGATLREKNWATQAEAGLSFATAGDFAWYDHVLTTTLLLGHTPKRH--ANGFPDLDTLFKVGRGQS 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_COREF (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Corynebacterium efficiens GN=metE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   46 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN------WNGGEIGFDVYFSMARGNASVPA 360
            +S I G PR+G  RELKFALE FW G  S  +L + +  L +    Q++ AG+  IP+   SYYD +LDTTA+LG  P R+        +G     D YF+ ARG A +PA
Sbjct:    6 SSTIAGVPRIGAHRELKFALEGFWSGTVSGRELGQTATTLTNDYCDQLAAAGLDSIPTAGRSYYDAMLDTTALLGVFPERFQNLDDHPNDGLPAHIDRYFATARGTAELPA 116          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_XYLFM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M12) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.141e-17
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +G+PR+G +RELK ALES W G++ A  LQ  + +LR+  W+   +AG+   PSN FS YD VLDT  +  A+P RY+          YF+MARG
Sbjct:    7 LGFPRIGARRELKRALESHWRGETDATQLQHTARELRARHWRLQRDAGVDLPPSNDFSLYDHVLDTAFLFDAIPQRYHGLVDADPLAGYFAMARG 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.141e-17
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +  HI+G+PR+G  RELK+ALE +WDGK   + L ++   LR   WKQ  ++GI +I    F++YD VL T+ ML  +P R+      I  +  F ++RG
Sbjct:    3 IVGHILGFPRIGLHRELKYALEYYWDGKIKEDKLLEIGRTLRIRHWKQQKDSGIDWISVGDFAWYDHVLTTSLMLNNIPDRHRIGQENINLNTLFRISRG 102          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_CAMJJ1.410e-1744.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAMJE1.410e-1744.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAMJ81.410e-1744.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCBP1.410e-1743.275-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLO1.410e-1743.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLD1.410e-1743.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBHA2.405e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COREF2.405e-1743.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_XYLFM3.141e-1745.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB3.141e-1740.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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