FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_COXBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRE+K  +E++W G+ S + LQ+ + +L+ + WK  +EAG+  IP   FS+YD VLD    +GA+P R+      I  D  F MARG A
Sbjct:    4 AHNLGFPRIGIKREMKKTVEAYWRGEISQQQLQQQAIELQLTNWKIQAEAGVDLIPVGDFSWYDHVLDMAVRVGAIPSRFKALNSNI-TDTMFCMARGQA 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_COXBN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRE+K  +E++W G+ S + LQ+ + +L+ + WK  +EAG+  IP   FS+YD VLD    +GA+P R+      I  D  F MARG A
Sbjct:    4 AHNLGFPRIGIKREMKKTVEAYWRGEISQQQLQQQAIELQLTNWKIQAEAGVDLIPVGDFSWYDHVLDMAVRVGAIPSRFKALNSNI-TDTMFCMARGQA 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_COXB1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRE+K  +E++W G+ S + LQ+ + +L+ + WK  +EAG+  IP   FS+YD VLD    +GA+P R+      I  D  F MARG A
Sbjct:    4 AHNLGFPRIGIKREMKKTVEAYWRGEISQQQLQQQAIELQLTNWKIQAEAGVDLIPVGDFSWYDHVLDMAVRVGAIPSRFKALNSNI-TDTMFCMARGQA 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CHRVO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromobacterium violaceum GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   46 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            A+H++G+PR+G KRELK  LE +W  +     L + + +LR   W     AG++  P   FS YD VLD   ++GA P R+ ++   +    YF +ARGNA  PA
Sbjct:    4 ATHLLGFPRIGAKRELKTLLERYWKQELDEAALSQGAKELRQKHWLLQKGAGVELSPVGDFSLYDHVLDAQLLVGAAPARFGFDAAALTTGQYFELARGNAVQPA 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LACLM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARG 342
            M   I+ +PR+G  RELKFALE ++  + S ++LQ V+ +LR   WK   EAGI Y  SN FS+YDQ LD +  LG +P RY      E+  D  F++ARG
Sbjct:    1 MKKSIIAFPRIGSNRELKFALEKYFRKEISEDELQIVAKELRLESWKSQKEAGIDYPISNDFSFYDQTLDLSIALGVIPERYKKLKLNEL--DTLFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_DESVM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M +H +G+PR+G  RELK A+E +W G ++ + L+  +  +R   W    EAGI  +P   F+ YD +LD   +LG +PPR+  +      D+ F MARG
Sbjct:    1 MRTHTLGFPRIGGNRELKKAVEDYWKGAATRQQLEDAARAIRLRNWTLQREAGIDVVPVGDFALYDHILDAALLLGVIPPRFRNDDAPRDIDLMFRMARG 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSYIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Psychromonas ingrahamii (strain 37) GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            H +G+PR+G KR+LKFALE FW G+ S + LQ  +ADLR   W    +  +       FS YDQVLD + ++G +P R   +  +   D YF +ARG +
Sbjct:    5 HHLGFPRIGNKRQLKFALEKFWGGELSEQQLQTSAADLRQQNWLDQQDLALDLYTVGDFSLYDQVLDMSFLVGNIPSRAKQSEQDNSLDNYFRVARGRS 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NEIG1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            H  G+PR+G  RELKFA E +W  + S ++L  V+ DLR   WK  + A   Y+    F++YD +LD     GA+P R+ ++   +  + +F +ARGN
Sbjct:    5 HFSGFPRVGAFRELKFAQEKYWRKEISEQELLDVAKDLREKNWKHQAAANADYVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLPLEQFFQLARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR++ W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAAHWQTQRDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_AQUAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Aquifex aeolicus GN=metE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWK-QMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            ++  G+P++G KRE K  LE++W GK S E+L K   +L  ++W+  +    ++ IPSN  SYYD +LDTT M+GA+P R+   G   G D YF MARG
Sbjct:    4 TYAFGFPKLGEKREFKRLLENYWKGKISQEELIKGMEEL--NLWRANLYRENVEIIPSNELSYYDFMLDTTVMVGAIPSRF---GEYRGLDTYFEMARG 97          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_COXBR5.358e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXBN5.358e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXB15.358e-1742.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRVO5.358e-1739.055-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLM6.998e-1745.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVM6.998e-1738.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSYIN9.139e-1741.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIG19.139e-1737.765-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURTA1.194e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_AQUAE1.194e-1644.445-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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