FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURP1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURP0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURMS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain SAVP1) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURM9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURM7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            + +H +G+PR+G +RELKF LE +W G+SS ++L+ + A+LR   W    +  +   P   FS+YDQVLD +  LG +P R     G++  D YF +ARG ++  A
Sbjct:    2 VTTHNLGFPRIGAQRELKFGLERYWKGESSRDELKALGAELRERHWNDQRD--LDLAPIGDFSFYDQVLDMSFTLGNLPKRVQGFHGDV-LDNYFRVARGRSAQAA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_XYLFA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa GN=metE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            + +PR+G +RELK ALES W G++ A  LQ  + +LR+  W+   + G+   PSN FS YD VLDT  +  A+P RY           YF+MARG
Sbjct:    7 LSFPRIGARRELKRALESHWRGETDATQLQHTARELRARHWQLQRDTGVDLPPSNDFSLYDHVLDTAFLFDAIPQRYRALADADPLAGYFAMARG 101
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THEEB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=metE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +GYPR+G  RELK ALE+FW  +  AE L K + D+    W++  E GI  I     S YD VLD +   G +P RY       G + YF+MARG   +PA
Sbjct:    8 LGYPRIGKNRELKKALEAFWSNQLDAEALLKTAQDIELQNWQKQLEVGIDRIGIGDLSLYDSVLDWSIRFGIIPERYR---SFTGLEQYFAMARGKDGIPA 105
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LACLA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. lactis GN=metE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARG 342
            M   I+ +PR+G  RELKFALE ++  + + E+LQ V+ ++R   WK   EAGI    SN FS+YDQ LD +  LGA+P  Y N    E+  D  F++ARG
Sbjct:    3 MKKSIIAFPRIGSNRELKFALEKYFRKEITEEELQTVAKEIRLENWKSQKEAGIDSPISNDFSFYDQTLDLSIALGAIPGSYKNLELSEL--DTLFALARG 101
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_BURP13.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP03.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMS3.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMA3.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM93.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM73.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA43.473e-1639.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_XYLFA4.536e-1643.165-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEEB4.536e-1642.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLA4.536e-1644.555-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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