FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SYNJB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Synechococcus sp. GN=metE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +GY RMG +RELK ALE FW G   +E L     DL +  W+   +AGI +I     + YD VLD    LG +P R+    G  G D YF+MARG   +PA
Sbjct:    8 LGYARMGKRRELKKALEGFWSGALGSEALLATFWDLETQAWQTQLQAGIDHIAVGDQTLYDHVLDWATWLGLIPSRFR---GLSGLDRYFAMARGREGLPA 105          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +H +G+PR+G  RELK A E+FW G+     L+ V  DLR + W+    AGI  +P   F++YDQVL  + M G +P R+    G       F MARG
Sbjct:    4 AHSLGFPRIGRDRELKKAQEAFWKGELDEAGLRAVGRDLRKTHWELQKNAGIDLLPVGDFAWYDQVLTHSLMFGVIPRRFRPQHGPATLQTLFGMARG 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNAS 351
            + +H +G+PR+G +RELKF LE +W G+SS + L+ + A+LR+  W   ++  +   P   FS+YDQVLD +  LG +P R     G++  D YF +ARG ++
Sbjct:    2 VTTHNLGFPRIGAQRELKFGLERYWKGESSRDALKALGAELRARHWN--AQRDLDLAPIGDFSFYDQVLDMSFTLGNLPKRVQGFHGDV-LDNYFRVARGRSA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            + +H +G+PR+G KRELKF LE +W G+SS ++L+ + A+LR   W    +  +   P   F++YDQVLD +  LG +P R     G+   D YF +ARG ++  A
Sbjct:    2 VTTHNLGFPRIGAKRELKFGLERYWKGESSRDELKALGAELRRRHWHDQRD--LDLAPLGDFAFYDQVLDMSFTLGNLPKRVQDFHGD-ALDNYFRVARGRSAQSA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            + +H +G+PR+G KRELKF LE +W G+SS ++L+ + A+LR   W    +  +   P   F++YDQVLD +  LG +P R     G+   D YF +ARG ++  A
Sbjct:    2 VTTHNLGFPRIGAKRELKFGLERYWKGESSRDELKALGAELRRRHWHDQRD--LDLAPIGDFAFYDQVLDMSFTLGNLPKRVQDFHGD-ALDNYFRVARGRSAQSA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            + +H +G+PR+G KRELKF LE +W G+SS ++L+ + A+LR   W    +  +   P   F++YDQVLD +  LG +P R     G+   D YF +ARG ++  A
Sbjct:    2 VTTHNLGFPRIGAKRELKFGLERYWKGESSRDELKALGAELRRRHWHDQRD--LDLAPLGDFAFYDQVLDMSFTLGNLPKRVQDFHGD-ALDNYFRVARGRSAQSA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BLOFL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia floridanus GN=metE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN-WNGGEIGFDVYFSMARGNA 348
            SHI+G+PR+G  RELK ALE +W+ K +   L  +   LR   WKQ   +GI  IP   FS+YD VLD + ML  +P R++  +  +   ++ FS+ARG++
Sbjct:    5 SHILGFPRIGLYRELKHALEQYWEKKITENKLLDIGRMLRMRHWKQQINSGINLIPIGDFSWYDHVLDMSIMLNNIPTRFHILSQKKNTLNMLFSIARGDS 105          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ALCBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWN-GGEIGFDVYFSMARGNA 348
            H +G+PR+G +RELK A E++W G     +L+ V   LR   W   ++AG+  +P   F++YD +L+ +++LG VP R+  +    +  D  F MARG A
Sbjct:    5 HNLGFPRIGARRELKQAQEAYWAGDLQQSELEHVGKSLRERHWALQADAGVDLMPVGDFAWYDHILEFSSLLGVVPSRFEQDANAPVNLDTLFRMARGRA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THESQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga sp. (strain RQ2) GN=metE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.251e-15
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            M ++  G+P++G KRE K ALE FW GK + E  ++    LR  + +   +  +  IPSN  SYYD VLDT  M+GAVP R+   G   G   YF MARG  ++
Sbjct:    1 MKAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNELSYYDFVLDTAVMVGAVPERF---GEYRGLSTYFDMARGGKAL 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THEMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga maritima GN=metE PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.251e-15
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            M ++  G+P++G KRE K ALE FW GK + E  ++    LR  + +   +  +  IPSN  SYYD VLDT  M+GAVP R+   G   G   YF MARG  ++
Sbjct:    1 MKAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNELSYYDFVLDTAVMVGAVPERF---GEYRGLSTYFDMARGGKAL 100          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_SYNJB5.924e-1643.565-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEF55.924e-1640.825-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM1.010e-1539.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH1.724e-1539.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC1.724e-1539.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA1.724e-1539.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOFL1.724e-1541.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALCBS1.724e-1537.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THESQ2.251e-1542.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEMA2.251e-1542.315-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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