FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus agalactiae serotype Ia GN=metE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +GYPR+G +RE K A+E+FW G    +DL+K    LR +  K+  EAGI  IP   FS YD VLD +     +P R+  +  E   D+YF++ARG+
Sbjct:    7 LGYPRLGEQREWKQAIEAFWAGNLEQKDLEKQLKQLRINHLKKQKEAGIDLIPVGDFSCYDHVLDLSFQFNIIPKRF--DEYERNLDLYFAIARGD 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEMY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas mendocina (strain ymp) GN=metE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            SH +G+PR+G  RELK ALE+ W G+     L+ V   LR+  W+   +AGI  +P   F++YDQVL  +     +P R+    G+   D  F+MARG
Sbjct:    4 SHSLGFPRIGRDRELKKALEAHWKGELDEAGLRAVGQRLRAEHWQLQKDAGIDLLPVGDFAWYDQVLAHSLAFDVIPERFRPAAGKPTLDTLFAMARG 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THEP1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            M  +  G+P++G KRE K ALE FW GK +    ++  ++LR  + +      +  +PSN  SYYD VLDT  M+GA+P R+   G   G   YF MARG  ++
Sbjct:    1 MKVYAFGFPKIGEKREFKKALEDFWKGKITENQFKEEMSELRMYMVENY-RTNVDVVPSNELSYYDFVLDTAIMVGAIPERF---GKYEGLSTYFEMARGRKAL 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_TRIEI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=metE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +++  +GYPR+G  RE+K ALESFW  K SA++L K+  ++  + W+  ++AGI+ I     + YDQ+LD +   G +P R+         + YF+MARG   + A
Sbjct:    3 ISTSTLGYPRIGKNREVKKALESFWQQKISADELLKIVREIEEASWQTQTKAGIERIGIGDATLYDQILDWSFRFGIIPKRFQQFQ---NLECYFAMARGKDGILA 105          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRSV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus sanguinis (strain SK36) GN=metE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEI-GFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + SAE+L   + +LR+  W  + E GI  IPSN FS+YD VLD   +   VP   +  G E+   + YF++ARG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRHEISAEELLAAAKELRAKHWNIVKEKGISEIPSNDFSHYDNVLDAAFLFNVVPS--SVQGLELTDLERYFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa GN=metE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIG--FDVYFSMARG 342
            +H +G+PR+G  RELK A E+FW G+     L+ V   LR++ W+   +AGI+ +P   F++YDQVL  +   G +P R+  + GE G      F MARG
Sbjct:    4 AHTLGFPRIGRDRELKKAQEAFWKGELDEAGLRAVGRQLRAAHWQVQKDAGIQLLPVGDFAWYDQVLTHSLTFGVIPERFRAH-GEAGPTLHTLFGMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIG--FDVYFSMARG 342
            +H +G+PR+G  RELK A E+FW G+     L+ V   LR++ W+   +AGI+ +P   F++YDQVL  +   G +P R+  + GE G      F MARG
Sbjct:    4 AHTLGFPRIGRDRELKKAQEAFWKGELDEAGLRAVGRQLRAAHWQVQKDAGIQLLPVGDFAWYDQVLTHSLTFGVIPERFRAH-GEAGPTLHTLFGMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEA8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=metE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIG--FDVYFSMARG 342
            +H +G+PR+G  RELK A E+FW G+     L+ V   LR++ W+   +AGI+ +P   F++YDQVL  +   G +P R+  + GE G      F MARG
Sbjct:    4 AHTLGFPRIGRDRELKKAQEAFWKGELDEAGLRAVGRQLRAAHWQVQKDAGIQLLPVGDFAWYDQVLTHSLTFGVIPERFRAH-GEAGPTLHTLFGMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            + +H +G+PR+G KRELKF LE +W G+SS ++L+ + A+LR   W    +  +   P   F++YDQVLD +  LG +P R     G+   D  F +ARG ++  A
Sbjct:    2 VTTHNLGFPRIGAKRELKFGLERYWKGESSRDELKALGAELRRRHWHDQRD--LDLAPIGDFAFYDQVLDMSFTLGNLPKRVQDFHGD-ALDNAFRVARGRSAQSA 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CHLRE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.489e-14
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            +++  +G+PR+G +R+LKFA+ES++ G S   +L  V+  ++S  W     AGI  I  +  + YDQVLDT   LGA+PPR+       G   Y++MARG A++
Sbjct:    2 LSTTTIGFPRIGNQRQLKFAMESYFKGDSGEAELLAVAHKVQSDAWALQKAAGIAVIGLDG-TLYDQVLDTITWLGAIPPRFKHLS---GLQRYYAMARGGAAL 101          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_STRA18.554e-1542.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEMY8.554e-1539.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEP11.117e-1439.425-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_TRIEI1.459e-1436.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRSV1.459e-1441.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAE1.906e-1440.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAB1.906e-1440.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA81.906e-1440.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCJ1.906e-1438.685-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHLRE2.489e-1439.425-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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