FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI+V + + L +NGK +  + +RDPA IPWG +GV+YVVES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIDV-NSNGLTVNGKAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            G  KVGINGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L ING  I +F +RDP++I WGD G +YVVES+GVFTT+ +
Sbjct:    2 GKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+ KY  YM KYDSTHGVFKGTI V   S L +NGK +K +++RDP+ IPW D G +Y+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFKGTIQV-SGSDLIVNGKTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+ KY AYM +YD+THG FKGTI V D + L +NGK +K +++RDPA IPW + G DY+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFKGTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            G  KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L ING  I +F +RDP++I WGD G +YVVES+GVFTT+ +
Sbjct:    2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 58/104 (55.77%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G  YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            K+G+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F GT+   ++  L ING+ I +F +RDPA I WGD G +YVVES+GVFTT  +
Sbjct:    3 KIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRFHGTVKA-ENGKLVINGQAITIFQERDPANIKWGDAGAEYVVESTGVFTTTEK 105          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_RAT8.197e-2755.77Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_RABIT8.197e-2755.77Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_AJECA8.197e-2755.77Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_PONAB1.071e-2654.21Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_FELCA1.071e-2655.77Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_PODAN1.398e-2655.77Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_NEUCR1.398e-2654.81Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_HUMAN1.398e-2653.27Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_PIG1.826e-2655.77Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_TRISI2.385e-2654.81Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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