FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 52/101 (51.49%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   + V D  TL    K + VF  R+P EIPWG  G +YVVES+GVFT
Sbjct:    5 KIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL-EINGK---LIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            VGINGFGRIGRL                NDPFI   YM Y+FKYDSTHG FKGT+    D  + + +GK    IKVF+ +DPA I WG    D+VVES+GVFTT
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTT 109          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL-EINGK---LIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            VGINGFGRIGRL                NDPFI   YM Y+FKYDSTHG FKGT+    D  + + +GK    IKVF+ +DPA I WG    D+VVES+GVFTT
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTT 109          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.017e-21
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + V D  TL    K + VF  R+P E PWG+ G +YVVES+GVFT
Sbjct:    4 KIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFT 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.017e-21
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D  TL    K + VF  R+P EIPWG+ G ++VVES+GVFT
Sbjct:    7 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFT 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG ++ ++D  L ++   I VF    P EIPWG  G DYVVES+GVF ++
Sbjct:    6 VGINGFGRIGRLVLRACLQKGIKVVAI-NDPFIDLQYMVYMFKYDSTHGRYKGEVS-MEDGKLIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSI 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+GINGFGRIGR+                ND  ID +YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + WG  GVD  VE++G+F T
Sbjct:    4 KIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRFDGTVEV-KDGNLVVNGKTIRVTAERDPANLNWGAIGVDIAVEATGLFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            NDPFID  YM YMFKYDS HG F+G ++   D  L INGK I VF++RDPA IPWG  G  YVVES+GVFTT+ +
Sbjct:   12 NDPFIDLDYMVYMFKYDSVHGRFEGEVST-KDGKLVINGKAITVFAERDPANIPWGTVGAQYVVESTGVFTTIEK 85          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 53/101 (52.48%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGRL                NDPFI   YM YMFKYDS HG  K   I + D+ TL      + VF  R+P EIPWG  G D+VVES+GVFT
Sbjct:    5 KVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 102          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3PE_MAIZE2.310e-2151.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P4_CAEEL2.310e-2152.88Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL2.310e-2152.88Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3PC_PETCR3.017e-2151.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI3.017e-2151.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ONCMY5.146e-2152.48Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_HAEIN5.146e-2151.49Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_BOLED6.721e-2162.67Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_MESCR6.721e-2152.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SALTY6.721e-2151.49Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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