FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 51/101 (50.50%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF+ R+P EIPW   G D +VES+GVFT
Sbjct:    6 KIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFT 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+GINGFGRIGRL                ND  + A  +AY+FKYDSTHG + GT+ V  +  + I+ + I  FS+R+PA++PWGD G DYVVES+G+FTT
Sbjct:    3 KIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGGTV-VAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            V +NGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++   D  + +NGK + VF+++DPA +PWG  GVD  ++S+G+F
Sbjct:    4 VSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRFDGEVSHDKDHII-LNGKKVAVFNEKDPAALPWGKLGVDVAIDSTGIF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 51/106 (48.11%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            S G  K+GINGFGRIGRL                NDPFI  + +  +FKYDS HG +K   + V D+ TL    K + VF  R+P EIPWG+ G +YVVES+GVFT
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFT 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA+YMAY  KYDSTHG F GT+ V+  + L +NGK I+V S+RDPA + W + GV+ VVES+G+F T
Sbjct:    3 KVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVIKGA-LVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT 102          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_SALTI6.721e-2151.49Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3PC_PEA8.778e-2150.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SYNY31.146e-2049.50Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P1_ESCF31.146e-2051.49Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_ZYGRO1.497e-2047.96Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3PC_TAXBA1.497e-2048.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_LEIME1.497e-2051.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL1.956e-2051.49Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI1.956e-2051.49Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL61.956e-2051.49Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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