FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +DPFID +YM YMFKYDS HG FKGT+ +  D  L I+G  I VF +RDPA I WG  G DYVVESSGVFTT+
Sbjct:   12 SDPFIDLQYMVYMFKYDSVHGRFKGTVEI-KDGKLVIDGHPITVFQERDPANIQWGSVGADYVVESSGVFTTV 83          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +VGINGFGRIGRL                NDPFID +YM YMFKYDS HG +KG +  VD   L I+   I VF +   + +PW   G +Y+VES+G+ TT+ +
Sbjct:    4 QVGINGFGRIGRLVLRAAVASNSVNVVAVNDPFIDLEYMVYMFKYDSAHGRYKGDVK-VDGGKLVIDSHRITVFQEMSASAVPWSQAGAEYIVESTGINTTVEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D  +L I+GK + VF +RDPA +PWG   +D  ++S+G+F  L   Q
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 50/101 (49.50%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    K + VF +R+P EIP    G +Y+VES+GVFT
Sbjct:    5 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++GK I  + +RDPA +PWG   VD  ++S+GVF  L   Q
Sbjct:    3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSH-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D   L I+GK + VF +RDPA +PWG   +D  ++S+G+F  L   Q
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            NDPFID  YM Y+FK+DSTHG FKGT+ V +   L +NG+ I VFS+RDPA I W   G +YVVES+GVFTT+ +
Sbjct:   21 NDPFIDVNYMVYLFKFDSTHGRFKGTV-VAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEK 94          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 49/106 (46.23%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G +   DD  + I+GK I V  +RDPA +PWG   +D  ++S+GVF  L   Q
Sbjct:    3 RIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEVTH-DDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            ++GINGFGRIGR+                NDPF D +YM YM KYD+ HG F GTI   +DS + +NG  I VF    P EIPWG   VD V+E +G FTT +  +L
Sbjct:    4 RLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHGRFDGTIAHSEDS-ITVNGNKISVFKSMKPEEIPWGKTQVDIVLECTGRFTTKKDAEL 109          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_ECO571.956e-2051.49Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_LACDT3.336e-2064.38Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ECHMU4.357e-2046.15Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P2_KLUMA4.357e-2046.23Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3PC_ANTMA5.690e-2049.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_YEAST5.690e-2046.23Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P3_KLUMA5.690e-2046.23Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_DROSU5.690e-2060.00Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P2_CANGA5.690e-2046.23Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P1_GIALA7.431e-2046.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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