FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            ++ INGFGRIGRL                NDPFI   Y AYM KYDSTHG +KGT++  DD  + I+G  I  + +RDPA +PWG   +D  V+S+GVF  L   Q
Sbjct:    3 RIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVS-HDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            V INGFGRIGRL                NDPF+   YM YM +YD+ HG F G+++  D++ + +NGK I+VF++ +P  I WG+  V YVVES+G FTTL +
Sbjct:    3 VAINGFGRIGRLVLRASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHGKFDGSLSH-DETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEK 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+GINGFGRIGR+                 +  ++  Y+AYM KYDS HG F G ++V D +TL +NGK I++ + +DPAE+ WG+ G D VVES+G+F T
Sbjct:    4 KIGINGFGRIGRMVFRAAIANFKDIEVVAINDLLEPDYLAYMLKYDSVHGRFDGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            NDPFID  YM YMFKYDS HG F G++    D  L IN K I VF KRDP +IPWG  G +Y+VES+GVFTT  +
Sbjct:   11 NDPFIDLAYMVYMFKYDSVHGRFSGSVET-KDGKLWINQKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEK 84          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +VGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F+G + V     L +NGK I+V S+RDPA + W +  VD VVES+G+F
Sbjct:    4 RVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFEGAVEV-QGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  376 INGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            INGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:    1 INGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 96          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 47/106 (44.34%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++G  I  F +RDPA +PW    +D  ++S+GVF  L   Q
Sbjct:    3 RVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGEVSH-DDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  328 PPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            PP     +      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KGT+    +  L ++   I VF  ++P EIPW   G  YVVE++GV+ ++
Sbjct:   88 PPPPPPPKPAKELTVGINGFGRIGRLVLRVCMEKGVRVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGTVE-HKNGRLVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSI 200          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+GINGFGRIGR+                ND  I+ +Y+AYM KYDS HG F G I V+ + TL +NGK I++ +++DP  + WGD  +D V+ES+G+F T
Sbjct:    4 KIGINGFGRIGRVLFRLAQLRSNIEILAIND-LINVQYIAYMLKYDSIHGNFNGKI-VIKNETLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG++    +  L ++   I V+  ++P +IPW D G  YVVES+GV+ ++
Sbjct:   79 VGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSI 177          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_YEAST9.705e-2046.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PHYIN1.268e-1945.63Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_RALSO2.162e-1945.54Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_AMAMU2.162e-1960.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_TRYBB2.162e-1950.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_KLEPN2.824e-1950.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_YEAST4.817e-1944.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3PT_RAT6.291e-1944.35Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_BUCBP8.216e-1945.54Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PT_MACFA1.073e-1847.52Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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