FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            TK+GINGFGRIGR                 ND   DAK +A++ KYD+ HG     ++  +++++ +NGK IKV ++RDPA++PW DYGV+ VVES+G FT
Sbjct:    2 TKIGINGFGRIGRNVFRAALNNSEVEVVAIND-LTDAKTLAHLLKYDTVHGTLNAEVSA-NENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFT 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  328 PPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            PP +QK   +    VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG +    +  L ++   I  +  +DP EIPW   G  YVVE +GV+ ++
Sbjct:   98 PPPLQKPARE--LTVGINGFGRIGRLVLRVCMEKGIRVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGNVE-HKNGQLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSI 208          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 52/125 (41.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  298 QPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +PI+      PP     +      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG +       L ++   I VF  + P EIPW   G  +VVE++GV+ +L
Sbjct:   41 EPIKEEVPPPPPPPPAPKKVRELIVGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDLEYMVYMFKYDSTHGRYKGNVE-HKKGQLVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSL 163          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            TKV INGFGRIGRL                ND   DAK +A++FKYDS+ G F G I V + + + +NGK +KVF++ DP ++PWG+ G+D V+E +G FT
Sbjct:    2 TKVAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGELGIDVVLECTGFFT 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+ INGFGRIGRL                ND   DAK +A++FKYDS+ G F G I V + + + +NGK +KVF++ DP ++PWGD G+D V+E +G FT
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFFT 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  316 ATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLR 675
            AT  P  +  +R      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG++    +  L ++   I V+  ++P +IPW   G  YVVES+GV+ +++
Sbjct:   63 ATPPPKMVSVARE---LTVGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQ 177          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXX-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI--NGKL--IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            +VGINGFGRIGRL                 NDPFI    MAY+FKYD+ HG F GT+ V  +  LEI  NG +  I V + ++PAEIPWG   V+ V+ESSG FTT+ +  L
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTV-VGKEGKLEITLNGHVYDIAVSACKNPAEIPWGASNVEVVIESSGAFTTMEKAHL 114          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  388 GRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            GRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    K ++VF  R+P EIPW + G D+VVES+GVFT
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFT 94          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G FKGT+ V +D   ++NGK +KV ++R+P +I W D GV+ V+E++G F T  + +
Sbjct:    4 KVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFKGTVEVKEDG-FDVNGKFVKVTAERNPEDIQWADSGVEIVLEATGFFATKEKAE 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGRL                ND  +    +AY+ KYDSTHG  +  +   DD  + I+G  I   S R+PAE+PWG  G DYVVES+G+FT
Sbjct:    5 KVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLRSQVEAKDDGIV-IDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFT 102          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_BACCE1.073e-1845.54Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3PT_MOUSE1.401e-1844.35Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_BOVIN1.830e-1841.60Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_CLOPA3.122e-1846.53Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_CLOAB5.326e-1846.00Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3PT_HUMAN5.326e-1842.50Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_MASBA1.549e-1748.21Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3PC_TOBAC1.549e-1748.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_LACLA2.643e-1742.45Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P1_ANAVT2.643e-1747.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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