FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGRL                ND  +    +AY+ KYDSTHG  +  +   DD  + I+G  I   S R+PAE+PWG  G DYVVES+G+FT
Sbjct:    5 KVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLRSQVETKDDGIV-IDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+GINGFGRIGR+                ND  +D KY+AYM KYDSTHG FK  I V +++ + INGK I++ S +DP ++ W    +D V+ES+G+F T
Sbjct:    4 KIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFKKDIEVKNNNLI-INGKKIRITSIKDPEKLMWDKLLIDVVIESTGLFLT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGR                 ND   DA  +A++ KYDS HG     + VVD S L +NGK I++ ++RDPA++ WG  GV+ VVES+G FT
Sbjct:    4 KIGINGFGRIGRNVFRAALKNDNVEVVAIND-LTDANMLAHLLKYDSVHGKLDAEV-VVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGR+                ND  +  +Y+AYM KYDSTHGVFK  I    D+ + INGK I+V S +DP ++ W D  +D V+ES+G+F
Sbjct:    4 KVGINGFGRIGRVLFRLAQKRSDIEIIAIND-LLAPEYIAYMLKYDSTHGVFKKHITFDKDNII-INGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTIN-------VVDDSTLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR+                     D   DA+Y AY  KYDS HG FK +++       V  D TL +NG +++ V ++R+PA++PWG  GV+YV+ES+G+FT
Sbjct:    4 KVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFT 115          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                  +  +DA+Y+AYM KYDS HG F+G +  V+D  L +NG  I++ ++ DPA + W +   D VVES+G F T
Sbjct:    3 KVGINGFGRIGRMVFRAAVKNFGNDIQIVGINDLLDAEYLAYMLKYDSVHGRFEGEV-AVEDGALIVNGNKIRLTAEMDPANLKWNEVDADVVVESTGFFLT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  283 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            AA+ I     T+T +     +  +    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GKLIKV S RDP ++PW + G+D V+E +GVF
Sbjct:   60 AAQIIPKAVTTSTPV-----RGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSG-GVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVF 182          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXX--NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            +V INGFGRIGRL                  ND   D K +A++ KYDS H  F G +   ++S + ++GK IKVF++ DP+++PW D GVD+V+ES+GVF    + +L
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAEL 109          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR                 ND   DA  +A++ +YDS HG     ++V D + L +NGK I+V ++RDPA++ WG  GV+ VVES+G FT
Sbjct:    4 KVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHGKLDAEVSV-DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 47/118 (39.83%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  328 PPTIQKSRSDGNT----KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            P T + +   G T    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GK IKV S RDP ++PW + G+D V+E +GVF
Sbjct:   39 PKTTRSTPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVF 155          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_ANASP3.452e-1747.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BUCAP7.690e-1745.54Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_BACME7.690e-1746.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BUCAI1.312e-1647.47Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PG_TRYBB1.312e-1642.86Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BACFR2.922e-1643.14Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PB_ARATH2.922e-1637.98Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_THEMA8.502e-1641.28Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P1_BACSU8.502e-1645.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3PB_TOBAC1.110e-1539.83Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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