FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTI-------NVVDDSTLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR+                     D   DA+Y AY  +YD+ HG FK  +       +V  D TL +NG +++ V ++R+PA++PWG  GV+YV+ES+G+FT
Sbjct:    4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFT 115          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 53/133 (39.85%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  286 AKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            A + QP  A  T   PT+Q          GINGFGRIGRL                N       YMAY FKYDS HG ++G + VVD   L I+G+ +     RDP +I W   GV+Y+ ES+GVF T  + Q
Sbjct:   31 APATQPKAAKMTG--PTMQA------VPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQGDV-VVDGDDLVIDGQRVITTRARDPKDIGWAKTGVEYLCESTGVFLTAEKAQ 154          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGTVEV-KDGHLVVNGKTIRVTAEKDPANLKWNEVGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  283 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            A  S   +RA A      +   R++   +V INGFGRIGR  L                ND     K  +++ KYDST G F   + +VDDS + ++GK IK+ S RDP ++PW +  +D V+E +GVF
Sbjct:   14 AVSSKSGVRAKAAR---AVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVF 138          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            +VGINGFGRIGR                  +   D    A++ KYD+  G  K  ++  +D T+ ++GK IKV S+R+PA+IPWG+ GVD V+ES+G+FT
Sbjct:    4 RVGINGFGRIGRNYFRALLEQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHTED-TITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKTIRVTAEKDPANLKWNEIGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAEKDPANLKWNEVGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KV INGFGRIGR  L                ND     K   ++ KYDS  G FK  + ++D+ T  I+GK IKV S RDP ++PW + G+D V+E +GVF
Sbjct:   86 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVF 185          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  340 QKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +++ ++   KV INGFGRIGR  L                 +     K  +++ KYDST G+F   +  V D+ + ++GK+IKV S R+P+ +PWG+ G+D V+E +GVF
Sbjct:   60 RRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVF 169          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3PG_TRYCR1.894e-1541.07Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PA_GUITH1.894e-1539.85Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_SERMA2.474e-1554.41Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_CHLRE2.474e-1536.43Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ESCVU2.474e-1555.88Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_STRCO3.231e-1542.00Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_ENTAE3.231e-1554.41Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ESCHE4.220e-1554.41Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PB_SPIOL5.511e-1542.57Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE5.511e-1536.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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