FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:   21 LDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F T
Sbjct:   21 LDADYMAYMLKYDSTHGRFNGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +V INGFGRIGRL                ND       +A++ KYDS HG FK  + V  D+TL I+ K + VFS++DPA +PW ++ +D VVES+G F +
Sbjct:    9 RVAINGFGRIGRLVFRALLSQKNIEIVAVND-LTHPDTLAHLLKYDSAHGEFKKKV-VAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVS 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GV+ V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGTVEV-KDGHLIVNGKKIRVTAERDPANLKWNEAGVEVVAEATGLFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  355 DGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +   KV INGFGRIGR  L                ND     K  +++ KYDS  G F   +    DS + ++GK+IKV S R+P  +PWGD G+D V+E +GVF
Sbjct:   64 EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVF 167          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_ESCFE5.511e-1555.88Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P_CITFR7.198e-1555.88Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MYCPN9.400e-1542.57Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_ESCBL1.228e-1454.41Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_SPIOL1.228e-1440.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_STRPY1.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP81.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP61.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP31.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP11.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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