FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNVEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR                 ND   DA  +A++ KYDS HG     ++V + + L +NGK I V ++RDP  + WG+ GVD VVES+G FT
Sbjct:    4 KVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSV-NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +DA+YMAYM KYDSTHG F G++ V  D  L +NG+ I+V +++DPA + W + GVD V E++G+F T
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGSVEV-KDGHLVVNGQTIRVTAEKDPANLKWNEVGVDVVAEATGIFLT 87          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            NDPFI   YM YMFKYD+ HG +K   + V D  TL    K + VF  R+P EIPW   G +YVVES+GVFT
Sbjct:    2 NDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFT 73          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  334 TIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            T  K  +    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + ++++ T+ ++GK IKV S RDP ++PW + G+D V+E +GVF
Sbjct:   76 TAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSG-GVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVF 186          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFID----AKYMAYMFKYDSTHGVFKGTINVVDDS-------TLEINGKLIK-VFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR+                    +D    A+Y AY  K+D+ HG  K T+  V  S        L +NG  IK V ++R+PA++PWG  GVDYV+ES+G+FT
Sbjct:    5 KVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFT 116          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 46/112 (41.07%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDS-------TLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR+                     D   DA+Y AY  K+D+ HG  K T+ V   S        L +NG +++ V + R+PA++PWG  GVDYV+ES+G+FT
Sbjct:    5 KVGINGFGRIGRMVFQSMCEDNVLGTELDVVAVVDMSTDAEYFAYQMKFDTVHGRPKYTVEVAKSSPSAKKPDVLVVNGHRILCVKADRNPADLPWGKLGVDYVIESTGLFT 116          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  355 DGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +   KV INGFGRIGR  L                ND     K  +++ KYDST G+F   +  V    + ++GK+I+V S R+P  +PWGD G+D V+E +GVF
Sbjct:   55 EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVF 158          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  379 NGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            NGFGRIGR  L                ND     K  +++ KYDST G F   + +VDD  + +NGK I+V S RDP ++PWG+  +D V+E +GVF
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSG-GVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVF 96          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR                 ND   +A  +A++ KYDS HG     + VV+D  + +NGK I V ++R+P  + WG+ GVD VVES+G FT
Sbjct:    4 KVGINGFGRIGRNVFRAAVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGRLDAEV-VVNDG-VSVNGKEIIVKAERNPENLAWGEIGVDIVVESTGRFT 101          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_STREQ1.603e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BACST1.603e-1445.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_SEROD2.094e-1451.47Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_HORVU2.094e-1454.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PB_PEA2.094e-1438.39Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PG_LEIME2.735e-1441.96Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_CRIFA3.572e-1441.07Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PA_TOBAC6.093e-1439.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SCEVA1.039e-1341.24Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_BACCO1.773e-1344.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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