FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 60/105 (57.14%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +GINGFGRIGRL                NDPFI  +Y AYMFKYDSTHG +KG +   DDS L I+G+ IKVF ++DPA IPWG  GVDYV+ES+GVFTT    Q
Sbjct:    5 IGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYKGEVTSKDDS-LVIDGQSIKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQ 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI   ++  + +NGK I+ F++RDPA IPWG  G DY+VES+GVFTT
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETYEEGLI-VNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            TKVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG FKG I V+ D  LE+NGK +K +++RDPA IPW +    YVVES+GVFTT  +
Sbjct:    4 TKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIKVLSDG-LEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVFTTTEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 61/105 (58.10%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            VGINGFGRIGRL                NDPFI   Y AYMFKYDSTHG FKGT+   +   L INGK I+VF +RDPA IPWG  GVDYV++S+GVFTT+   Q
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTH-EGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQ 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG++ V  D  L IN K I VF ++DPA I WG+ G +YVVES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFKGSVEV-KDGKLYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L ING  I +F +RDP+ I W D G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKA-ENGKLVINGHAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.068e-26
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   D + L INGK +K +++RDPA IPW + G DYVVES+GVFTT+
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEI-AQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTI 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F+GT+   ++  L ING  I +F +RDP+ I W D G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFRGTVKA-ENGKLVINGNAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 58/100 (58.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGR+                NDPFID +Y AYMFKYDSTHG FKG +   D   + I+GK I+VF +RDP+ IPWG  G DYVVES+GVFT
Sbjct:    4 KVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+ KY  YM +YDSTHG FKGTI  V+ S L +NGK +K +++RDP+ IPW + G DY+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFKGTI-AVEGSDLVVNGKKVKFYTERDPSAIPWSETGADYIVESTGVFTTTEK 106          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_DEBHA2.385e-2657.14Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_ASPNG2.385e-2656.44Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_SCLSC3.115e-2655.24Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_PICAN3.115e-2658.10Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CRYNE3.115e-2656.73Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CHICK3.115e-2654.81Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_COLLN4.068e-2656.86Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_COLLI5.313e-2653.85Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_YARLI6.939e-2658.00Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_SORMA6.939e-2653.85Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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