FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +T   + Q
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KV INGFGRIGRL                ND     + +A++ KYDS HG  K  I V   + L+I+ K + VFS++DP  +PW ++ +D V+ES+G F +
Sbjct:    9 KVAINGFGRIGRLVFRSLLSKANVEVVAIND-LTQPEVLAHLLKYDSAHGELKRKITV-KQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVS 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KV ING+GRIGR  L                 +   +A   A++ +YD+ HG F G ++V D     +NG  I+V ++R+PAE+PWG+ GVD V+E +G+FT+
Sbjct:    4 KVAINGYGRIGRNVLRAHYEGGKRHDLEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSV-DGDAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTS 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KV ING+GRIGR  L                 +   +A   A++ +YD+ HG F G ++V D     +NG  I+V ++R+PAE+PWG+ GVD V+E +G+FT+
Sbjct:    4 KVAINGYGRIGRNVLRAHYEGGKRHDIEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSV-DGDAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTS 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  340 QKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +K  ++   KV INGFGRIGR  L                ND     K  +++ KYDST G+F   +    ++ + ++GK+I+V S R+P+ +PW + G+D V+E +GVF
Sbjct:   54 RKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVF 162          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K+ INGFGRIGR                 ND   D K +A++ KYDST GV+   +    D  + ++G+ IK+ ++RDP  +PW   G+D V+ES+GVF++
Sbjct:    2 KLAINGFGRIGR-NVFKIAFERGIDIVAIND-LTDPKTLAHLLKYDSTFGVYNKKVES-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSS 99          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            ++GINGFGRIGR                  +   D   MA++  YDS  G F   +   +   + +  + IKV ++RDP  +PWGD GVD V+ES+G+FT
Sbjct:    4 RIGINGFGRIGRNVFRAAAARSSELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEVTA-EPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFT 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +KVGINGFGRIGRL                 +     K +AY+ K+DS +G F  +++  +DS + ++GK I V+++++   IPW   G + +VE +G +T+  + Q
Sbjct:    2 SKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLI-VDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +KVGINGFGRIGRL                 +     K +AY+ K+DS +G F  +++  +DS + ++GK I V+++++   IPW   G + +VE +G +T+  + Q
Sbjct:    2 SKVGINGFGRIGRLVLRRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLI-VDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KV INGFGRIGR+                N  +  A+ +A++ KYD+ HG +   +   +DS + +NGK + + + RDP ++PW +Y +D VVE++G F
Sbjct:    4 KVAINGFGRIGRMVFRKAMLDDQIQVVAINASY-SAETLAHLIKYDTIHGRYDKEVVAGEDSLI-VNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKF 100          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_STAAC2.315e-1338.68Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P_MYCGE3.950e-1339.60Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3PP_RALEH5.158e-1338.83Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH5.158e-1338.83Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PA_ARATH5.158e-1335.45Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_BORBU1.149e-1238.61Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_STRAE1.501e-1237.00Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P3_ECOLI1.960e-1233.64Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P3_ECO571.960e-1233.64Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P2_BACSU3.343e-1236.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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