FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 58/104 (55.77%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y  YMFKYDSTHG FKG I V D   L I+GK IK + +RDPA IPW D G +Y+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 59/107 (55.14%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            KVGINGFG IGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L IN ++I VF +RDP+ I WGD G  YVVES+GVFTT  +  L
Sbjct:    3 KVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFKGTVKA-ENGKLIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASL 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            KVGINGFGRIGRL                NDPFID +YM YM K DSTHG F G ++  ++  L++NGKLI V  +RDPA IPW   G +YVVES+GVFTT+ + Q
Sbjct:    5 KVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVST-ENGKLKVNGKLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQ 109          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 59/102 (57.84%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            KVGINGFGRIGRL                NDPFI   YM YMFK+DS HG +KGT+    D  L I GK I VF +RDPA IPWG  G DYVVES+GVFTT+
Sbjct:    4 KVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYKGTVEA-KDGKLIIAGKPIAVFGERDPASIPWGASGADYVVESTGVFTTI 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKGTI   D+  + +NGK I+  ++RDPA IPWG  G +Y+VES+GVFTT
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYDEGLI-VNGKKIRFHTERDPANIPWGQDGAEYIVESTGVFTT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGRL                NDPFID  YM YMF+YDSTHG +KG +   +   L I+G  I V+S+RDPA I WGD G  YVVES+GVFTT+ +
Sbjct:    3 KVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYKGEVKA-EGGKLVIDGHAITVYSERDPANIKWGDAGATYVVESTGVFTTIEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG I V D   L +NGK I+ +S+RDPA I W + G +Y+VES+GVFTT+
Sbjct:    4 KVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFKGDIEV-DGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVFTTI 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +   D+  L+++GK ++ + +RDPA IPW + G DYV+ES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSDNG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFID +YMAYMFKYDSTHG F G++  + D  L I+G  I V ++RDPA+I W   G DYV+ES+GVFTT
Sbjct:    5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVE-IKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTT 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            VGINGFGRIGRL                NDPFI  +Y AYMFKYDSTH  +KG ++    + + I+GK I VF +RDP  IPWG  GVDYV+ES+GVFTTL   Q
Sbjct:    5 VGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSA-SGNKINIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQ 108          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_TRIKO3.444e-2555.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_XENLA4.498e-2555.14Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_SCHMA4.498e-2553.77Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_OMPOL4.498e-2557.84Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_EMENI5.874e-2554.46Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_DANRE5.874e-2554.81Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_TRIAT1.002e-2453.92Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_COCIM1.002e-2450.96Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_SCHPO1.002e-2455.45Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PICPA1.309e-2454.29Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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