FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG + V + S L + GK ++ +++RDPA IPW + G DY+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTV-EGSDLVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG + V D   L +NGK ++ +++R+PA+I W + G +YVVES+GVFTT  +
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHGLFKGEVEV-DGKDLVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVFTTTEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +YVVES+GVFTT+
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTI 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFID +Y AYM KYDS+HGVFKG I   D   L +NGK +K  ++RDP+ IPW   G +Y+VES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFKGEIKK-DADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EIPWG+ G +YVVES+GVFT
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFT 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +Y+VES+GVFTT+
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGANVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTI 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG I V + + L INGK I+ ++++DPA IPW + G  YVVES+GVFTT
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFKGDIKV-EGNDLTINGKTIRFYTEKDPANIPWSETGAYYVVESTGVFTT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHGVFKG +  ++D  L ++GK I VF++  P  IPW   G +Y+VES+GVFTT+ +
Sbjct:    1 SKIGINGFGRIGRLVLRAALSCGAQVVAV-NDPFIALEYMVYMFKYDSTHGVFKGEVK-MEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEK 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVFT
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFT 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            K GINGFGRIGR+                NDPFID +YM YMFKYDSTHG FKGT+    D  L +NGK I V+++RDP  IP G  G +Y+VES+GVFTT
Sbjct:    4 KAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFKGTVE-AKDGKLVVNGKPISVYAERDPCCIP-GRIGAEYIVESTGVFTT 102          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_CRYPA6.495e-2450.96Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_TRIKO6.495e-2450.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P1_DROME6.495e-2454.37Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_CLAPU8.483e-2452.88Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3PC_PINSY8.483e-2452.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROME8.483e-2453.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_PHANO1.108e-2354.46Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_HOMAM1.447e-2351.43Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3PC_GINBI1.447e-2352.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI2.468e-2355.45Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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