FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 58/123 (47.15%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   + V D  TL    K + VF  R+P EIPWG  G +YVVES+GVF           GGAK   IS+ S
Sbjct:    5 KIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPS 127          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D+++L I+GK + VF +RDPA +PWG++ VD  ++S+GVF            GAK   I++ S
Sbjct:    3 RVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSH-DENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 60/126 (47.62%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINV-VDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGRL                NDPFI+  YM YMF YDSTHG F G I+    +  +E  GK    IKVF+ +DPAEI W + G +YV+ES+GVF           GGAK   IS+ S
Sbjct:    5 KVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNGKISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPS 130          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            VGINGFGRIGRL                NDPFI  +Y +YMFKYDSTHG + G ++  +   + I+GK I+V+ +RDP  IPWG  GVDYV++S+GVF            GAK   I++ S
Sbjct:    5 VGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSH-EGENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 59/121 (48.76%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG ++ ++D  L ++   I VF    P EIPWG  G DYVVES+GVF           GGAK   +S+ S
Sbjct:    6 VGINGFGRIGRLVLRACLQKGIKVVAI-NDPFIDLQYMVYMFKYDSTHGRYKGEVS-MEDGKLIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  391 RIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            RIGRL                NDPFID  YM YMF+YDSTHG FKGT+   ++  L INGK I +F +RDP  I WGD G +YVVES+GVF           GGAK   IS+ S
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFKGTVKA-ENGKLVINGKAITIFQERDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 113          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 58/123 (47.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + V D  TL    K + VF  R+P E PWG+ G +YVVES+GVF           GGAK   IS+ S
Sbjct:    4 KIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 126          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 58/123 (47.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D  TL    K + VF  R+P EIPWG+ G ++VVES+GVF           GGAK   IS+ S
Sbjct:    7 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            VGINGFGRIGRL                NDPF+D +YMAY+FKYDS HG ++G +    D  L I+G  I  F++R+PA I W D G +Y+VES+GVF           GGAK
Sbjct:    4 VGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQGKVET-KDGKLIIDGHKIAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 53/114 (46.49%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR+                NDPFI   Y AYMFKYDSTHG + G +   DD  L I+GK IK + +RDPA++PWGD  +D V+E++GVF            GAK
Sbjct:    3 RVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTH-DDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAK 115          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3PE_MAIZE2.347e-2247.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA2.347e-2245.08Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_GLORO2.347e-2247.62Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_PICCI3.066e-2245.45Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ONCMY3.066e-2248.76Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_MESAU3.066e-2249.12Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_PETCR3.066e-2247.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI3.066e-2247.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_AGABI3.066e-2246.90Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P1_CANGA5.229e-2246.49Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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