FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D  +L I+GK + VF +RDPA +PWG   +D  ++S+G+F            GAK   I++ S
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 53/122 (43.44%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +VGINGFGRIGRL                NDPFID +YM YMFKYDS HG +KG +  VD   L I+   I VF +   + +PW   G +Y+VES+G+            GGAK   IS+ S
Sbjct:    4 QVGINGFGRIGRLVLRAAVASNSVNVVAVNDPFIDLEYMVYMFKYDSAHGRYKGDVK-VDGGKLVIDSHRITVFQEMSASAVPWSQAGAEYIVESTGINTTVEKASAHFQGGAKKVIISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA+YMAY  KYDSTHG F GT+ V+  + L +NGK I+V S+RDPA + W + GV+ VVES+G+F            GA+
Sbjct:    3 KVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVIKGA-LVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGAR 114          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++GK I  + +RDPA +PWG   VD  ++S+GVF            GAK   I++ S
Sbjct:    3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSH-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D   L I+GK + VF +RDPA +PWG   +D  ++S+G+F            GAK   I++ S
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSH-DGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G +   DD  + I+GK I V  +RDPA +PWG   +D  ++S+GVF            GAK   I++ S
Sbjct:    3 RIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEVTH-DDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            NDPFID  YM Y+FK+DSTHG FKGT+ V +   L +NG+ I VFS+RDPA I W   G +YVVES+GVF           GGAK   IS+ S
Sbjct:   21 NDPFIDVNYMVYLFKFDSTHGRFKGTV-VAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPS 112          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            ++ INGFGRIGRL                NDPFI   Y AYM KYDSTHG +KGT++  DD  + I+G  I  + +RDPA +PWG   +D  V+S+GVF            GAK   I++ S
Sbjct:    3 RIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVS-HDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPS 123          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P1_ECOL62.197e-2047.37Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.197e-2047.37Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P2_KLUMA2.869e-2042.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_ECHMU3.748e-2043.44Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3PC_LEIME3.748e-2046.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_YEAST3.748e-2042.62Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P3_KLUMA3.748e-2042.62Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_CANGA3.748e-2042.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P2_DROSU6.392e-2053.76Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P1_YEAST6.392e-2042.62Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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