FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +VGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F+G + V     L +NGK I+V S+RDPA + W +  VD VVES+G+F            GAK
Sbjct:    4 RVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFEGAVEV-QGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            NDPFID  YM YMFKYDS HG F G++    D  L IN K I VF KRDP +IPWG  G +Y+VES+GVF           GGAK   IS+ S
Sbjct:   11 NDPFIDLAYMVYMFKYDSVHGRFSGSVET-KDGKLWINQKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIVISAPS 102          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 50/122 (40.98%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGR+                 +  ++  Y+AYM KYDS HG F G ++V D +TL +NGK I++ + +DPAE+ WG+ G D VVES+G+F            GAK   +S+ S
Sbjct:    4 KIGINGFGRIGRMVFRAAIANFKDIEVVAINDLLEPDYLAYMLKYDSVHGRFDGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 53/122 (43.44%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            ++GINGFGRIGR+                NDPF D +YM YM KYD+ HG F GTI   +DS + +NG  I VF    P EIPWG   VD V+E +G F           GG K   IS+ S
Sbjct:    4 RLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHGRFDGTIAHSEDS-ITVNGNKISVFKSMKPEEIPWGKTQVDIVLECTGRFTTKKDAELHITGGCKRVIISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 51/111 (45.95%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  376 INGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            INGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    1 INGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 109          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++G  I  F +RDPA +PW    +D  ++S+GVF            GAK   I++ S
Sbjct:    3 RVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGEVSH-DDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            K+GINGFGRIGR+                ND  I+ +Y+AYM KYDS HG F G I V+ + TL +NGK I++ +++DP  + WGD  +D V+ES+G+F            GAK   I+S
Sbjct:    4 KIGINGFGRIGRVLFRLAQLRSNIEILAIND-LINVQYIAYMLKYDSIHGNFNGKI-VIKNETLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITS 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG++    +  L ++   I V+  ++P +IPW D G  YVVES+GV+            GA+   IS+ S
Sbjct:   79 VGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSIEAASNHISAGAQRVVISAPS 197          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/127 (41.73%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  328 PPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            PP     +      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KGT+    +  L ++   I VF  ++P EIPW   G  YVVE++GV+            GA+
Sbjct:   88 PPPPPPPKPAKELTVGINGFGRIGRLVLRVCMEKGVRVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGTVE-HKNGRLVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGAR 212          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 52/116 (44.83%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  388 GRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            GRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    K ++VF  R+P EIPW + G D+VVES+GVF           GGAK   IS+ S
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 116          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3PC_TRYBB8.349e-2046.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_AMAMU1.424e-1953.76Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_RALSO1.860e-1940.98Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P1_GIALA1.860e-1943.44Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_KLEPN3.173e-1945.95Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_YEAST3.173e-1940.98Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_BUCBP4.143e-1941.67Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PT_MACFA7.068e-1943.80Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_RAT9.231e-1941.73Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_TOBAC1.575e-1844.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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