FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGRL                ND  +    +AY+ KYDSTHG  +  +   DD  + I+G  I   S R+PAE+PWG  G DYVVES+G+F            GA+   IS+
Sbjct:    5 KVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLRSQVETKDDGIV-IDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISA 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXX-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI--NGKL--IKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +VGINGFGRIGRL                 NDPFI    MAY+FKYD+ HG F GT+ V  +  LEI  NG +  I V + ++PAEIPWG   V+ V+ESSG F           GGAK   I++ S
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTV-VGKEGKLEITLNGHVYDIAVSACKNPAEIPWGASNVEVVIESSGAFTTMEKAHLHQQGGAKKVLITAPS 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            K+GINGFGRIGR+                ND  +D KY+AYM KYDSTHG FK  I V +++ + INGK I++ S +DP ++ W    +D V+ES+G+F            GAK
Sbjct:    4 KIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFKKDIEVKNNNLI-INGKKIRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +  +Y+AYM KYDSTHGVFK  I    D+ + INGK I+V S +DP ++ W D  +D V+ES+G+F            G+K
Sbjct:    4 KVGINGFGRIGRVLFRLAQKRSDIEIIAIND-LLAPEYIAYMLKYDSTHGVFKKHITFDKDNII-INGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G FKGT+ V +D   ++NGK +KV ++R+P +I W D GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFKGTVEVKEDG-FDVNGKFVKVTAERNPEDIQWADSGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                  +  +DA+Y+AYM KYDS HG F+G +  V+D  L +NG  I++ ++ DPA + W +   D VVES+G F            GAK   +S+ S
Sbjct:    3 KVGINGFGRIGRMVFRAAVKNFGNDIQIVGINDLLDAEYLAYMLKYDSVHGRFEGEV-AVEDGALIVNGNKIRLTAEMDPANLKWNEVDADVVVESTGFFLTDETARKHIQAGAKKVIMSAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  283 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            AA+ I     T+T +     +  +    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GKLIKV S RDP ++PW + G+D V+E +GVF
Sbjct:   60 AAQIIPKAVTTSTPV-----RGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSG-GVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVF 182          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            +VGINGFGRIGR                  +   D    A++ KYD+  G  K  ++  +D T+ ++GK IKV S+R+PA+IPWG+ GVD V+ES+G+F           GGAK   IS+
Sbjct:    4 RVGINGFGRIGRNYFRALLEQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHTED-TITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISA 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  328 PPTIQKSRSDGNT----KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            P T + +   G T    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GK IKV S RDP ++PW + G+D V+E +GVF            GAK
Sbjct:   39 PKTTRSTPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 170          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTI-------NVVDDSTLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR+                     D   DA+Y AY  +YD+ HG FK  +       +V  D TL +NG +++ V ++R+PA++PWG  GV+YV+ES+G+F           GGA+   IS+
Sbjct:    4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISA 135          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P1_ANASP5.065e-1741.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_MASBA8.640e-1744.88Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_BUCAP8.640e-1742.11Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_BUCAI1.128e-1642.98Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_LACLA1.474e-1644.44Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P_BACFR2.514e-1639.02Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PB_ARATH3.283e-1637.98Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_STRCO4.288e-1639.17Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PB_TOBAC4.288e-1637.59Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PG_TRYCR5.600e-1637.88Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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