FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR                 ND   DA  +A++ +YDS HG     ++V D + L +NGK I+V ++RDPA++ WG  GV+ VVES+G F            GAK   IS+
Sbjct:    4 KVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHGKLDAEVSV-DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXX--NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGRL                  ND   D K +A++ KYDS H  F G +   ++S + ++GK IKVF++ DP+++PW D GVD+V+ES+GVF            GAK
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAK 116          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            +V INGFGRIGRL                ND       +A++ KYDS HG FK  + V  D+TL I+ K + VFS++DPA +PW ++ +D VVES+G F            GAK   IS+
Sbjct:    9 RVAINGFGRIGRLVFRALLSQKNIEIVAVND-LTHPDTLAHLLKYDSAHGEFKKKV-VAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAKRVIISA 126          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            NDPFI   YM YMFKYD+ HG +K   + V D  TL    K + VF  R+P EIPW   G +YVVES+GVF           GGAK   IS+ S
Sbjct:    2 NDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPS 95          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 46/116 (39.66%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KV INGFGRIGR  L                ND     K   ++ KYDS  G FK  + ++D+ T  I+GK IKV S RDP ++PW + G+D V+E +GVF            GAK
Sbjct:   86 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 200          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  340 QKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +++ ++   KV INGFGRIGR  L                 +     K  +++ KYDST G+F   +  V D+ + ++GK+IKV S R+P+ +PWG+ G+D V+E +GVF            GAK
Sbjct:   60 RRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAK 184          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGTVEV-KDGHLVVNGKTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  283 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            A  S   +RA A      +   R++   +V INGFGRIGR  L                ND     K  +++ KYDST G F   + +VDDS + ++GK IK+ S RDP ++PW +  +D V+E +GVF
Sbjct:   14 AVSSKSGVRAKAAR---AVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVF 138          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAK 100          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P1_BACSU5.600e-1640.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_THEMA9.552e-1640.52Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P_MYCPN2.128e-1540.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3PC_HORVU2.128e-1547.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PB_SPIOL2.128e-1539.66Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE2.128e-1534.40Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_SERMA2.779e-1548.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_CHLRE2.779e-1536.43Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ESCVU2.779e-1549.38Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ENTAE3.630e-1548.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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